RNA–Protein interactions for RNA: ENST00000543025.5

KDM2B-216, Transcript of lysine demethylase 2B, humanhuman

TSL 1 (best)

Gene KDM2B, Length 2,522 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM2B-216ENST00000543025 NISCHQ9Y2I1 1504 aa35.12■■■■□ 3.21
KDM2B-216ENST00000543025 CCDC180Q9P1Z9 1646 aa30.91■■■□□ 2.54
KDM2B-216ENST00000543025 ABCC9O60706 1549 aa29.58■■■□□ 2.33
KDM2B-216ENST00000543025 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
KDM2B-216ENST00000543025 DCAF1Q9Y4B6 1507 aa29.05■■■□□ 2.24
KDM2B-216ENST00000543025 DCAF8L2P0C7V8 631 aa29.04■■■□□ 2.24
KDM2B-216ENST00000543025 SHROOM4Q9ULL8 1493 aa29.03■■■□□ 2.24
KDM2B-216ENST00000543025 MYO15BQ96JP2 1530 aa28.89■■■□□ 2.21
KDM2B-216ENST00000543025 NACADO15069 1562 aa28.86■■■□□ 2.21
KDM2B-216ENST00000543025 RB1CC1Q8TDY2 1594 aa28.73■■■□□ 2.19
KDM2B-216ENST00000543025 SUPT5HO00267 1087 aaKnown RBP28.54■■■□□ 2.16
KDM2B-216ENST00000543025 SCRIBQ14160 1630 aa28.33■■■□□ 2.13
KDM2B-216ENST00000543025 UNC13AQ9UPW8 1703 aa28.21■■■□□ 2.11
KDM2B-216ENST00000543025 BICRAQ9NZM4 1560 aa27.89■■■□□ 2.05
KDM2B-216ENST00000543025 CHIC1Q5VXU3 224 aa27.87■■■□□ 2.05
KDM2B-216ENST00000543025 PABPN1Q86U42 306 aaKnown RBP eCLIP27.75■■■□□ 2.03
KDM2B-216ENST00000543025 CECR2Q9BXF3 1484 aa27.32■■□□□ 1.96
KDM2B-216ENST00000543025 HRCP23327 699 aa27.26■■□□□ 1.95
KDM2B-216ENST00000543025 BAZ1AQ9NRL2 1556 aaPredicted RBP27.16■■□□□ 1.94
KDM2B-216ENST00000543025 SMARCA4P51532 1647 aa27.13■■□□□ 1.93
KDM2B-216ENST00000543025 MROH2BQ7Z745 1585 aa27.12■■□□□ 1.93
KDM2B-216ENST00000543025 PCGF6Q9BYE7 350 aa27.11■■□□□ 1.93
KDM2B-216ENST00000543025 EIF4G1Q04637 1599 aaKnown RBP27.07■■□□□ 1.92
KDM2B-216ENST00000543025 RSF1Q96T23 1441 aaPredicted RBP27.04■■□□□ 1.92
KDM2B-216ENST00000543025 LOC105371045A0A1W2PR82 267 aa26.98■■□□□ 1.91
KDM2B-216ENST00000543025 WIZO95785 1651 aa26.9■■□□□ 1.9
KDM2B-216ENST00000543025 PEG3Q9GZU2 1588 aa26.82■■□□□ 1.88
KDM2B-216ENST00000543025 CC2D2AQ9P2K1 1620 aa26.79■■□□□ 1.88
KDM2B-216ENST00000543025 ATAD2BQ9ULI0 1458 aa26.76■■□□□ 1.87
KDM2B-216ENST00000543025 SMARCA2P51531 1590 aa26.75■■□□□ 1.87
KDM2B-216ENST00000543025 TRIM26Q12899 539 aaPredicted RBP26.65■■□□□ 1.86
KDM2B-216ENST00000543025 TRIM41Q8WV44 630 aa26.64■■□□□ 1.85
KDM2B-216ENST00000543025 NCAPD3P42695 1498 aa26.6■■□□□ 1.85
KDM2B-216ENST00000543025 TOP2AP11388 1531 aaKnown RBP26.6■■□□□ 1.85
KDM2B-216ENST00000543025 BAZ1BQ9UIG0 1483 aaKnown RBP26.59■■□□□ 1.85
KDM2B-216ENST00000543025 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
KDM2B-216ENST00000543025 PPARGC1BQ86YN6 1023 aaKnown RBP26.57■■□□□ 1.84
KDM2B-216ENST00000543025 DNAJC5BQ9UF47 199 aa26.47■■□□□ 1.83
KDM2B-216ENST00000543025 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.81
KDM2B-216ENST00000543025 CCDC88BA6NC98 1476 aa26.28■■□□□ 1.8
KDM2B-216ENST00000543025 ZEB1P37275 1124 aaPredicted RBP26.17■■□□□ 1.78
KDM2B-216ENST00000543025 EHMT2Q96KQ7 1210 aa26.05■■□□□ 1.76
KDM2B-216ENST00000543025 CFTRP13569 1480 aa25.89■■□□□ 1.74
KDM2B-216ENST00000543025 CADPSQ9ULU8 1353 aa25.87■■□□□ 1.73
KDM2B-216ENST00000543025 PRDM2Q13029 1718 aa25.84■■□□□ 1.73
KDM2B-216ENST00000543025 NESP48681 1621 aa25.83■■□□□ 1.73
KDM2B-216ENST00000543025 LAMC3Q9Y6N6 1575 aa25.82■■□□□ 1.72
KDM2B-216ENST00000543025 ABCC8Q09428 1581 aa25.79■■□□□ 1.72
KDM2B-216ENST00000543025 WRNQ14191 1432 aaPredicted RBP eCLIP25.62■■□□□ 1.69
KDM2B-216ENST00000543025 FANCD2Q9BXW9 1451 aa25.61■■□□□ 1.69
KDM2B-216ENST00000543025 EEA1Q15075 1411 aa25.59■■□□□ 1.69
KDM2B-216ENST00000543025 KIF21AQ7Z4S6 1674 aa25.58■■□□□ 1.69
KDM2B-216ENST00000543025 PDS5BQ9NTI5 1447 aa25.58■■□□□ 1.68
KDM2B-216ENST00000543025 SOGA1O94964 1423 aa25.57■■□□□ 1.68
KDM2B-216ENST00000543025 CEP162Q5TB80 1403 aa25.56■■□□□ 1.68
KDM2B-216ENST00000543025 TNIKQ9UKE5 1360 aa25.53■■□□□ 1.68
KDM2B-216ENST00000543025 CEP164Q9UPV0 1460 aa25.5■■□□□ 1.67
KDM2B-216ENST00000543025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.47■■□□□ 1.67
KDM2B-216ENST00000543025 CSRNP3Q8WYN3 585 aa25.46■■□□□ 1.67
KDM2B-216ENST00000543025 CCER1Q8TC90 406 aaPredicted RBP25.45■■□□□ 1.67
KDM2B-216ENST00000543025 SYNJ1O43426 1573 aa25.43■■□□□ 1.66
KDM2B-216ENST00000543025 RUSC2Q8N2Y8 1516 aa25.41■■□□□ 1.66
KDM2B-216ENST00000543025 ERCC6Q03468 1493 aa25.4■■□□□ 1.66
KDM2B-216ENST00000543025 CUX1P39880 1505 aa25.39■■□□□ 1.66
KDM2B-216ENST00000543025 GOLGA3Q08378 1498 aa25.37■■□□□ 1.65
KDM2B-216ENST00000543025 BIVM-ERCC5R4GMW8 1640 aa25.36■■□□□ 1.65
KDM2B-216ENST00000543025 TOP2BQ02880 1626 aa25.36■■□□□ 1.65
KDM2B-216ENST00000543025 UBTFP17480 764 aaKnown RBP25.34■■□□□ 1.65
KDM2B-216ENST00000543025 URB2Q14146 1524 aaKnown RBP25.33■■□□□ 1.65
KDM2B-216ENST00000543025 DNMBPQ6XZF7 1577 aa25.32■■□□□ 1.64
KDM2B-216ENST00000543025 MRC2Q9UBG0 1479 aa25.31■■□□□ 1.64
KDM2B-216ENST00000543025 TOPBP1Q92547 1522 aa25.29■■□□□ 1.64
KDM2B-216ENST00000543025 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
KDM2B-216ENST00000543025 TTBK1Q5TCY1 1321 aaPredicted RBP25.27■■□□□ 1.64
KDM2B-216ENST00000543025 WDR62O43379 1518 aa25.22■■□□□ 1.63
KDM2B-216ENST00000543025 KIF21BO75037 1637 aa25.21■■□□□ 1.63
KDM2B-216ENST00000543025 FGD5Q6ZNL6 1462 aa25.18■■□□□ 1.62
KDM2B-216ENST00000543025 SCAF1Q9H7N4 1312 aaKnown RBP25.15■■□□□ 1.62
KDM2B-216ENST00000543025 POLA1P09884 1462 aaPredicted RBP25.13■■□□□ 1.61
KDM2B-216ENST00000543025 CLIP1P30622 1438 aa25.06■■□□□ 1.6
KDM2B-216ENST00000543025 DIEXFQ68CQ4 756 aaKnown RBP25.04■■□□□ 1.6
KDM2B-216ENST00000543025 RAD54L2Q9Y4B4 1467 aa25.03■■□□□ 1.6
KDM2B-216ENST00000543025 CUX2O14529 1486 aa25.01■■□□□ 1.59
KDM2B-216ENST00000543025 VPS8Q8N3P4 1428 aa24.99■■□□□ 1.59
KDM2B-216ENST00000543025 WDR97A6NE52 1622 aa24.99■■□□□ 1.59
KDM2B-216ENST00000543025 TARBP1Q13395 1621 aaKnown RBP24.98■■□□□ 1.59
KDM2B-216ENST00000543025 RAPGEF2Q9Y4G8 1499 aa24.96■■□□□ 1.59
KDM2B-216ENST00000543025 ABCA10Q8WWZ4 1543 aa24.95■■□□□ 1.58
KDM2B-216ENST00000543025 ACIN1Q9UKV3 1341 aaKnown RBP24.93■■□□□ 1.58
KDM2B-216ENST00000543025 IFT140Q96RY7 1462 aa24.91■■□□□ 1.58
KDM2B-216ENST00000543025 PELP1Q8IZL8 1130 aaKnown RBP24.9■■□□□ 1.58
KDM2B-216ENST00000543025 APLP2Q06481 763 aa24.85■■□□□ 1.57
KDM2B-216ENST00000543025 KIF27Q86VH2 1401 aa24.85■■□□□ 1.57
KDM2B-216ENST00000543025 ZNF316A6NFI3 1004 aaPredicted RBP24.84■■□□□ 1.57
KDM2B-216ENST00000543025 NEUROD1Q13562 356 aa24.83■■□□□ 1.57
KDM2B-216ENST00000543025 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.57
KDM2B-216ENST00000543025 HNRNPUL2Q1KMD3 747 aaKnown RBP24.82■■□□□ 1.56
KDM2B-216ENST00000543025 CENPBP07199 599 aaPredicted RBP24.81■■□□□ 1.56
KDM2B-216ENST00000543025 ZNF608Q9ULD9 1512 aaPredicted RBP24.8■■□□□ 1.56
KDM2B-216ENST00000543025 TDRD9Q8NDG6 1382 aaKnown RBP24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms