Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 LIN28AP1-201ENST00000429574 405 ntBASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 AC002558.1-201ENST00000488906 803 ntBASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 GPR32P1-201ENST00000601788 811 ntBASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AC097374.2-201ENST00000618617 1306 ntBASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AC046185.3-201ENST00000623228 1824 ntBASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 YBX1P2-201ENST00000489612 999 ntBASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AC139887.4-201ENST00000607877 719 ntBASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMA1Q9UHB6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 BX664615.1-201ENST00000443558 458 ntBASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ATP5G1P1-201ENST00000448724 379 ntBASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ZNF444P1-201ENST00000559497 298 ntBASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMA1Q9UHB6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMA1Q9UHB6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms