Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AC007967.3-201ENST00000434308 558 ntBASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AC011467.2-201ENST00000598425 242 ntBASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 IFNL4P1-201ENST00000607083 540 ntBASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AL691432.3-201ENST00000621860 400 ntBASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 FZD10-202ENST00000539839 3282 ntBASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 UNC93B7-201ENST00000509439 705 ntBASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 AC010460.3-201ENST00000511359 1579 ntBASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD1Q96NR3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 INTS4P1-201ENST00000438455 1935 ntBASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 FAM220CP-201ENST00000395253 831 ntBASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms