Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 LINC01126-201ENST00000623515 1646 ntBASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RPUSD4Q96CM3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 FLJ38576-201ENST00000623820 2459 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PCDHA1-201ENST00000378133 2726 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 KRT16P1-201ENST00000399124 1418 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 AC128676.1-201ENST00000454392 318 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 AC091390.4-202ENST00000476426 537 ntBASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPUSD4Q96CM3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 KRT18P41-201ENST00000518924 1277 ntBASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC14.09□□□□□ -0.15
RPUSD4Q96CM3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms