Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 MRPL20P1-201ENST00000400819 433 ntBASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 IGHV3-52-201ENST00000519770 353 ntBASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 SNHG9-202ENST00000564014 471 ntBASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AC116407.2-201ENST00000613639 860 ntBASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 AC010654.1-201ENST00000615722 808 ntBASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 BCAR1-209ENST00000546196 1340 ntBASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 AL031432.2-201ENST00000566714 459 ntBASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 AL928711.1-201ENST00000570165 459 ntBASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
USHBP1Q8N6Y0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.14■■□□□ 1.3
USHBP1Q8N6Y0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USHBP1Q8N6Y0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
USHBP1Q8N6Y0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USHBP1Q8N6Y0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
USHBP1Q8N6Y0 PC-214ENST00000628663 1470 ntTSL 5 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
USHBP1Q8N6Y0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 CEND1P1-201ENST00000451006 455 ntBASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 KRT19P2-202ENST00000557173 1012 ntBASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 LINC02084-201ENST00000606069 1096 ntBASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
USHBP1Q8N6Y0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 ELL2P1-201ENST00000413990 1906 ntBASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms