Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL645939.2-201ENST00000427340 991 ntBASIC15.19■□□□□ 0.02
ABCA4P78363 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 AC011467.4-201ENST00000594891 528 ntBASIC15.19■□□□□ 0.02
ABCA4P78363 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.19■□□□□ 0.02
ABCA4P78363 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.18■□□□□ 0.02
ABCA4P78363 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 ALG1L5P-201ENST00000482043 771 ntBASIC15.18■□□□□ 0.02
ABCA4P78363 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
ABCA4P78363 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 SNHG9-202ENST00000564014 471 ntBASIC15.18■□□□□ 0.02
ABCA4P78363 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.18■□□□□ 0.02
ABCA4P78363 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
ABCA4P78363 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.18■□□□□ 0.02
ABCA4P78363 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA4P78363 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA4P78363 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA4P78363 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 AL096828.2-201ENST00000567259 1965 ntBASIC15.18■□□□□ 0.02
ABCA4P78363 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA4P78363 PRSS29P-201ENST00000440800 595 ntBASIC15.18■□□□□ 0.02
ABCA4P78363 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA4P78363 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA4P78363 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
ABCA4P78363 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.17■□□□□ 0.02
ABCA4P78363 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.17■□□□□ 0.02
ABCA4P78363 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.17■□□□□ 0.02
ABCA4P78363 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
ABCA4P78363 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 CROCCP3-202ENST00000420820 1947 ntBASIC15.17■□□□□ 0.02
ABCA4P78363 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.17■□□□□ 0.02
ABCA4P78363 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.17■□□□□ 0.02
ABCA4P78363 AC103564.2-201ENST00000432853 1299 ntBASIC15.17■□□□□ 0.02
ABCA4P78363 AC244107.1-201ENST00000442033 332 ntBASIC15.17■□□□□ 0.02
ABCA4P78363 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
ABCA4P78363 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.17■□□□□ 0.02
ABCA4P78363 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA4P78363 AC104581.1-202ENST00000635932 2618 ntBASIC15.17■□□□□ 0.02
ABCA4P78363 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms