Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LMO4P61968 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.48□□□□□ -0.09
LMO4P61968 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
LMO4P61968 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LMO4P61968 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 AC138028.4-201ENST00000564984 1845 ntBASIC14.48□□□□□ -0.09
LMO4P61968 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LMO4P61968 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMO4P61968 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 AC005104.2-201ENST00000427818 678 ntBASIC14.47□□□□□ -0.09
LMO4P61968 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 RPS15P9-201ENST00000494093 319 ntBASIC14.47□□□□□ -0.09
LMO4P61968 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.47□□□□□ -0.09
LMO4P61968 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.47□□□□□ -0.09
LMO4P61968 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.47□□□□□ -0.09
LMO4P61968 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.47□□□□□ -0.09
LMO4P61968 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LMO4P61968 AC064836.3-201ENST00000607928 673 ntBASIC14.47□□□□□ -0.09
LMO4P61968 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.47□□□□□ -0.09
LMO4P61968 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
LMO4P61968 AC097637.2-201ENST00000624096 1997 ntBASIC14.47□□□□□ -0.09
LMO4P61968 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMO4P61968 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.46□□□□□ -0.09
LMO4P61968 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.46□□□□□ -0.09
LMO4P61968 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.46□□□□□ -0.09
LMO4P61968 YBX2P1-201ENST00000394192 760 ntBASIC14.46□□□□□ -0.09
LMO4P61968 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
LMO4P61968 UPF3AP3-201ENST00000420996 769 ntBASIC14.46□□□□□ -0.09
LMO4P61968 AC108073.2-201ENST00000464002 357 ntBASIC14.46□□□□□ -0.09
LMO4P61968 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 IGHV3-65-201ENST00000523210 341 ntBASIC14.46□□□□□ -0.09
LMO4P61968 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.46□□□□□ -0.09
LMO4P61968 AC008667.4-201ENST00000607370 168 ntBASIC14.46□□□□□ -0.09
LMO4P61968 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LMO4P61968 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
LMO4P61968 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.46□□□□□ -0.1
LMO4P61968 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LMO4P61968 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.45□□□□□ -0.1
LMO4P61968 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.45□□□□□ -0.1
LMO4P61968 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.45□□□□□ -0.1
LMO4P61968 RPSAP43-201ENST00000402237 625 ntBASIC14.45□□□□□ -0.1
LMO4P61968 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms