Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
VSX2P58304 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.96■□□□□ 0.3
VSX2P58304 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
VSX2P58304 INTS4P1-201ENST00000438455 1935 ntBASIC16.96■□□□□ 0.3
VSX2P58304 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 KRT18P55-202ENST00000578578 1546 ntBASIC16.96■□□□□ 0.3
VSX2P58304 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX2P58304 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 FAM220CP-201ENST00000395253 831 ntBASIC16.95■□□□□ 0.3
VSX2P58304 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.95■□□□□ 0.3
VSX2P58304 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.95■□□□□ 0.3
VSX2P58304 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.95■□□□□ 0.3
VSX2P58304 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.95■□□□□ 0.3
VSX2P58304 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.95■□□□□ 0.3
VSX2P58304 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX2P58304 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX2P58304 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX2P58304 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX2P58304 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 AC132008.2-207ENST00000454517 770 ntBASIC16.94■□□□□ 0.3
VSX2P58304 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 OR6D1P-202ENST00000641007 5290 ntBASIC16.94■□□□□ 0.3
VSX2P58304 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 AC020916.1-201ENST00000587762 1774 ntBASIC16.94■□□□□ 0.3
VSX2P58304 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX2P58304 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX2P58304 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
VSX2P58304 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.93■□□□□ 0.3
VSX2P58304 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
VSX2P58304 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.93■□□□□ 0.3
VSX2P58304 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX2P58304 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms