Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX3P48380 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.69■□□□□ 0.26
RFX3P48380 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX3P48380 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX3P48380 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.69■□□□□ 0.26
RFX3P48380 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RFX3P48380 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RFX3P48380 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RFX3P48380 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.69■□□□□ 0.26
RFX3P48380 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 LINC00167-201ENST00000530583 1419 ntBASIC16.69■□□□□ 0.26
RFX3P48380 AC134043.2-201ENST00000624206 2238 ntBASIC16.69■□□□□ 0.26
RFX3P48380 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RFX3P48380 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RFX3P48380 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.68■□□□□ 0.26
RFX3P48380 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
RFX3P48380 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.68■□□□□ 0.26
RFX3P48380 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.68■□□□□ 0.26
RFX3P48380 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 AC008764.6-201ENST00000595909 2069 ntBASIC16.68■□□□□ 0.26
RFX3P48380 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 AC100803.2-201ENST00000562459 1963 ntBASIC16.68■□□□□ 0.26
RFX3P48380 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 AL645929.1-201ENST00000420084 975 ntBASIC16.68■□□□□ 0.26
RFX3P48380 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.68■□□□□ 0.26
RFX3P48380 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.68■□□□□ 0.26
RFX3P48380 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.68■□□□□ 0.26
RFX3P48380 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.68■□□□□ 0.26
RFX3P48380 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
RFX3P48380 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
RFX3P48380 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RFX3P48380 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
RFX3P48380 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.67■□□□□ 0.26
RFX3P48380 Z83836.1-201ENST00000624605 1642 ntBASIC16.67■□□□□ 0.26
RFX3P48380 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.67■□□□□ 0.26
RFX3P48380 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
RFX3P48380 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.67■□□□□ 0.26
RFX3P48380 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 MIR662-201ENST00000384847 95 ntBASIC16.67■□□□□ 0.26
RFX3P48380 TSPY12P-201ENST00000421279 868 ntBASIC16.67■□□□□ 0.26
RFX3P48380 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.67■□□□□ 0.26
RFX3P48380 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.67■□□□□ 0.26
RFX3P48380 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.67■□□□□ 0.26
RFX3P48380 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.67■□□□□ 0.26
RFX3P48380 AC005332.3-201ENST00000589904 676 ntBASIC16.67■□□□□ 0.26
RFX3P48380 AL590326.2-201ENST00000625139 305 ntBASIC16.67■□□□□ 0.26
RFX3P48380 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
RFX3P48380 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms