Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 SLC25A1P1-201ENST00000528351 927 ntBASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 AF228730.7-201ENST00000641842 219 ntBASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 HLA-J-201ENST00000462773 1622 ntBASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 AC148477.5-201ENST00000625164 1645 ntBASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 AC003669.1-201ENST00000334569 611 ntBASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 STK25P1-201ENST00000585406 838 ntBASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 AC008735.5-201ENST00000623544 497 ntBASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMIM28A0A1B0GU29 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 KLF4P1-201ENST00000412782 1185 ntBASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 AC002558.1-201ENST00000488906 803 ntBASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 IGHV3-52-201ENST00000519770 353 ntBASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SMIM28A0A1B0GU29 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 REXO1L11P-201ENST00000620964 1927 ntBASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 LAGE3P1-201ENST00000425356 484 ntBASIC18.94■□□□□ 0.62
SMIM28A0A1B0GU29 AC005104.2-201ENST00000427818 678 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms