Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 HLA-J-201ENST00000462773 1622 ntBASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 AC092183.1-201ENST00000469884 875 ntBASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 AC027601.4-201ENST00000611259 610 ntBASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 FAM197Y3-203ENST00000618346 717 ntBASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 AC067852.2-201ENST00000590513 2313 ntBASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA9Q9Y5G4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 ANO7L1-203ENST00000602586 1720 ntBASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 MIR940-201ENST00000401276 94 ntBASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 AL591424.1-201ENST00000442569 1213 ntBASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 AL139288.1-201ENST00000623748 933 ntBASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDHGA9Q9Y5G4 AL356309.3-201ENST00000624132 1934 ntBASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA9Q9Y5G4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 KRT18P65-201ENST00000439811 1286 ntBASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 PGAM5P1-201ENST00000518923 814 ntBASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PCDHGA9Q9Y5G4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms