Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 AL024508.2-201ENST00000607749 1894 ntBASIC17.79■□□□□ 0.44
SHOX2O60902 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.78■□□□□ 0.44
SHOX2O60902 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.78■□□□□ 0.44
SHOX2O60902 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 KRT8P9-201ENST00000558927 1449 ntBASIC17.78■□□□□ 0.44
SHOX2O60902 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SHOX2O60902 LINC02228-204ENST00000642115 2962 ntBASIC17.78■□□□□ 0.44
SHOX2O60902 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.78■□□□□ 0.44
SHOX2O60902 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SHOX2O60902 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.78■□□□□ 0.44
SHOX2O60902 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHOX2O60902 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SHOX2O60902 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.77■□□□□ 0.44
SHOX2O60902 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 GUSBP6-202ENST00000438529 1198 ntBASIC17.77■□□□□ 0.44
SHOX2O60902 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
SHOX2O60902 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.77■□□□□ 0.44
SHOX2O60902 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 AC092118.2-201ENST00000613495 667 ntBASIC17.77■□□□□ 0.44
SHOX2O60902 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.77■□□□□ 0.44
SHOX2O60902 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHOX2O60902 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SHOX2O60902 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.77■□□□□ 0.43
SHOX2O60902 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.77■□□□□ 0.43
SHOX2O60902 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHOX2O60902 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.77■□□□□ 0.43
SHOX2O60902 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SHOX2O60902 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHOX2O60902 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SHOX2O60902 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SHOX2O60902 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.76■□□□□ 0.43
SHOX2O60902 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms