Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDL3P58872 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RHBDL3P58872 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.94■□□□□ 0.94
RHBDL3P58872 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDL3P58872 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDL3P58872 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDL3P58872 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.94■□□□□ 0.94
RHBDL3P58872 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.93■□□□□ 0.94
RHBDL3P58872 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.93■□□□□ 0.94
RHBDL3P58872 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RHBDL3P58872 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.93■□□□□ 0.94
RHBDL3P58872 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RHBDL3P58872 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.93■□□□□ 0.94
RHBDL3P58872 AC002558.1-201ENST00000488906 803 ntBASIC20.93■□□□□ 0.94
RHBDL3P58872 AC108751.1-201ENST00000490852 363 ntBASIC20.93■□□□□ 0.94
RHBDL3P58872 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.93■□□□□ 0.94
RHBDL3P58872 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.93■□□□□ 0.94
RHBDL3P58872 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.93■□□□□ 0.94
RHBDL3P58872 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.93■□□□□ 0.94
RHBDL3P58872 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
RHBDL3P58872 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
RHBDL3P58872 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 NCF1C-201ENST00000438382 1427 ntBASIC20.93■□□□□ 0.94
RHBDL3P58872 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.93■□□□□ 0.94
RHBDL3P58872 AC009336.1-201ENST00000608941 1553 ntBASIC20.93■□□□□ 0.94
RHBDL3P58872 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDL3P58872 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.92■□□□□ 0.94
RHBDL3P58872 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 AC005104.2-201ENST00000427818 678 ntBASIC20.92■□□□□ 0.94
RHBDL3P58872 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.92■□□□□ 0.94
RHBDL3P58872 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.92■□□□□ 0.94
RHBDL3P58872 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RHBDL3P58872 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RHBDL3P58872 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDL3P58872 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDL3P58872 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDL3P58872 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDL3P58872 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.91■□□□□ 0.94
RHBDL3P58872 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDL3P58872 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 MIR1233-2-201ENST00000408138 82 ntBASIC20.91■□□□□ 0.94
RHBDL3P58872 MIR1233-1-201ENST00000408722 82 ntBASIC20.91■□□□□ 0.94
RHBDL3P58872 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RHBDL3P58872 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.91■□□□□ 0.94
RHBDL3P58872 KRT18P2-201ENST00000447938 1258 ntBASIC20.91■□□□□ 0.94
RHBDL3P58872 STK19B-204ENST00000512515 211 ntBASIC20.91■□□□□ 0.94
RHBDL3P58872 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDL3P58872 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.91■□□□□ 0.94
RHBDL3P58872 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RHBDL3P58872 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDL3P58872 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
RHBDL3P58872 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.91■□□□□ 0.94
RHBDL3P58872 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
RHBDL3P58872 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RHBDL3P58872 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RHBDL3P58872 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDL3P58872 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDL3P58872 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
RHBDL3P58872 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.9■□□□□ 0.94
RHBDL3P58872 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDL3P58872 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RHBDL3P58872 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RHBDL3P58872 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms