Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
HOXC4P09017 KRT18P27-201ENST00000427733 1299 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXC4P09017 STK19B-204ENST00000512515 211 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 AC012640.2-201ENST00000561606 901 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 AC145285.3-201ENST00000564603 959 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 AC106730.1-201ENST00000566722 1090 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXC4P09017 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXC4P09017 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC4P09017 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXC4P09017 PGM5P2-202ENST00000637225 1043 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 AF228730.7-201ENST00000641842 219 ntBASIC17.3■□□□□ 0.36
HOXC4P09017 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC4P09017 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC4P09017 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXC4P09017 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXC4P09017 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
HOXC4P09017 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.29■□□□□ 0.36
HOXC4P09017 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXC4P09017 RPL13AP23-201ENST00000480739 586 ntBASIC17.29■□□□□ 0.36
HOXC4P09017 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.29■□□□□ 0.36
HOXC4P09017 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.29■□□□□ 0.36
HOXC4P09017 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HOXC4P09017 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HOXC4P09017 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 AL354751.1-201ENST00000412768 1863 ntBASIC17.29■□□□□ 0.36
HOXC4P09017 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC4P09017 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC4P09017 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.28■□□□□ 0.36
HOXC4P09017 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 AC009336.1-201ENST00000608941 1553 ntBASIC17.28■□□□□ 0.36
HOXC4P09017 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC4P09017 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.28■□□□□ 0.36
HOXC4P09017 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC4P09017 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.28■□□□□ 0.36
HOXC4P09017 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.28■□□□□ 0.36
HOXC4P09017 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.28■□□□□ 0.36
HOXC4P09017 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 LINC01451-201ENST00000623792 534 ntBASIC17.28■□□□□ 0.36
HOXC4P09017 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HOXC4P09017 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC4P09017 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC4P09017 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC4P09017 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 AC135050.7-201ENST00000624508 2218 ntBASIC17.27■□□□□ 0.36
HOXC4P09017 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.27■□□□□ 0.36
HOXC4P09017 MIR574-201ENST00000385209 96 ntBASIC17.27■□□□□ 0.36
HOXC4P09017 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.27■□□□□ 0.36
HOXC4P09017 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 PMS2P1-201ENST00000431037 1228 ntBASIC17.27■□□□□ 0.36
HOXC4P09017 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms