Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
COL3A1P02461 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
COL3A1P02461 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL3A1P02461 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL3A1P02461 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL3A1P02461 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
COL3A1P02461 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23.39■■□□□ 1.33
COL3A1P02461 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
COL3A1P02461 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC23.39■■□□□ 1.33
COL3A1P02461 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
COL3A1P02461 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC23.39■■□□□ 1.33
COL3A1P02461 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 CENPM-204ENST00000402420 688 ntTSL 5 BASIC23.38■■□□□ 1.33
COL3A1P02461 AC098831.1-202ENST00000438821 336 ntBASIC23.38■■□□□ 1.33
COL3A1P02461 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 RPL18-209ENST00000550645 463 ntTSL 5 BASIC23.38■■□□□ 1.33
COL3A1P02461 RPL18-214ENST00000552588 559 ntTSL 3 BASIC23.38■■□□□ 1.33
COL3A1P02461 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC23.38■■□□□ 1.33
COL3A1P02461 ETFA-208ENST00000559602 792 ntTSL 3 BASIC23.38■■□□□ 1.33
COL3A1P02461 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC23.38■■□□□ 1.33
COL3A1P02461 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.38■■□□□ 1.33
COL3A1P02461 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
COL3A1P02461 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.38■■□□□ 1.33
COL3A1P02461 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC23.38■■□□□ 1.33
COL3A1P02461 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 HLA-J-201ENST00000462773 1622 ntBASIC23.38■■□□□ 1.33
COL3A1P02461 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
COL3A1P02461 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC23.38■■□□□ 1.33
COL3A1P02461 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC23.38■■□□□ 1.33
COL3A1P02461 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
COL3A1P02461 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL3A1P02461 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
COL3A1P02461 SLC25A1P3-201ENST00000395415 828 ntBASIC23.37■■□□□ 1.33
COL3A1P02461 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC23.37■■□□□ 1.33
COL3A1P02461 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC23.37■■□□□ 1.33
COL3A1P02461 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC23.37■■□□□ 1.33
COL3A1P02461 RPS29-206ENST00000557111 488 ntTSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 AC064862.7-201ENST00000604520 867 ntBASIC23.37■■□□□ 1.33
COL3A1P02461 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
COL3A1P02461 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC23.37■■□□□ 1.33
COL3A1P02461 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 NOC2LP2-201ENST00000407594 1944 ntBASIC23.37■■□□□ 1.33
COL3A1P02461 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
COL3A1P02461 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL3A1P02461 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC23.36■■□□□ 1.33
COL3A1P02461 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.36■■□□□ 1.33
COL3A1P02461 AL355312.1-201ENST00000407115 2176 ntBASIC23.36■■□□□ 1.33
COL3A1P02461 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 STK19B-204ENST00000512515 211 ntBASIC23.36■■□□□ 1.33
COL3A1P02461 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.36■■□□□ 1.33
COL3A1P02461 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.36■■□□□ 1.33
COL3A1P02461 AC145285.3-201ENST00000564603 959 ntBASIC23.36■■□□□ 1.33
COL3A1P02461 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC23.36■■□□□ 1.33
COL3A1P02461 LINC01451-201ENST00000623792 534 ntBASIC23.36■■□□□ 1.33
COL3A1P02461 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC23.36■■□□□ 1.33
COL3A1P02461 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.36■■□□□ 1.33
COL3A1P02461 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC23.36■■□□□ 1.33
COL3A1P02461 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL3A1P02461 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC23.35■■□□□ 1.33
COL3A1P02461 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC23.35■■□□□ 1.33
COL3A1P02461 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 NCF1C-201ENST00000438382 1427 ntBASIC23.35■■□□□ 1.33
COL3A1P02461 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL3A1P02461 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms