Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.19■□□□□ 0.5
CBX4O00257 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.19■□□□□ 0.5
CBX4O00257 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 FAAHP1-202ENST00000446499 1238 ntBASIC18.19■□□□□ 0.5
CBX4O00257 KRT16P4-201ENST00000453883 522 ntBASIC18.19■□□□□ 0.5
CBX4O00257 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CBX4O00257 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.19■□□□□ 0.5
CBX4O00257 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 LINC01711-201ENST00000598340 967 ntBASIC18.19■□□□□ 0.5
CBX4O00257 AC114341.1-201ENST00000618070 349 ntBASIC18.19■□□□□ 0.5
CBX4O00257 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CBX4O00257 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
CBX4O00257 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CBX4O00257 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
CBX4O00257 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CBX4O00257 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.18■□□□□ 0.5
CBX4O00257 RCN1P2-201ENST00000398357 915 ntBASIC18.18■□□□□ 0.5
CBX4O00257 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.18■□□□□ 0.5
CBX4O00257 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.18■□□□□ 0.5
CBX4O00257 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.18■□□□□ 0.5
CBX4O00257 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.18■□□□□ 0.5
CBX4O00257 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 AC116407.2-201ENST00000613639 860 ntBASIC18.18■□□□□ 0.5
CBX4O00257 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.18■□□□□ 0.5
CBX4O00257 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.18■□□□□ 0.5
CBX4O00257 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CBX4O00257 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.17■□□□□ 0.5
CBX4O00257 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CBX4O00257 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 AC009949.1-201ENST00000623048 1830 ntBASIC18.17■□□□□ 0.5
CBX4O00257 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.17■□□□□ 0.5
CBX4O00257 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms