Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC18.86■□□□□ 0.61
NOTCH3Q9UM47 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 BHLHE23-202ENST00000612929 1109 ntBASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NOTCH3Q9UM47 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NOTCH3Q9UM47 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NOTCH3Q9UM47 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.84■□□□□ 0.61
NOTCH3Q9UM47 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NOTCH3Q9UM47 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NOTCH3Q9UM47 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
NOTCH3Q9UM47 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
NOTCH3Q9UM47 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NOTCH3Q9UM47 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NOTCH3Q9UM47 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 PVT1_1.1-201ENST00000615125 194 ntBASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NOTCH3Q9UM47 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NOTCH3Q9UM47 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NOTCH3Q9UM47 AC103834.1-201ENST00000520383 144 ntBASIC18.79■□□□□ 0.6
NOTCH3Q9UM47 AC103724.3-201ENST00000564481 992 ntBASIC18.79■□□□□ 0.6
NOTCH3Q9UM47 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.79■□□□□ 0.6
NOTCH3Q9UM47 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NOTCH3Q9UM47 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NOTCH3Q9UM47 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 YBX1P4-201ENST00000392794 808 ntBASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 MIR4508-201ENST00000584178 70 ntBASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NOTCH3Q9UM47 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
NOTCH3Q9UM47 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.77■□□□□ 0.6
NOTCH3Q9UM47 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NOTCH3Q9UM47 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NOTCH3Q9UM47 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.77■□□□□ 0.59
NOTCH3Q9UM47 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NOTCH3Q9UM47 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NOTCH3Q9UM47 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NOTCH3Q9UM47 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NOTCH3Q9UM47 MIR6765-201ENST00000614092 87 ntBASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NOTCH3Q9UM47 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.74■□□□□ 0.59
NOTCH3Q9UM47 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 AL356441.2-201ENST00000443009 864 ntBASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 THA1P-201ENST00000590384 1145 ntBASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.73■□□□□ 0.59
NOTCH3Q9UM47 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NOTCH3Q9UM47 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NOTCH3Q9UM47 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms