Protein–RNA interactions for Protein: Q3KNW1

SNAI3, Zinc finger protein SNAI3, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNAI3Q3KNW1 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.32■■□□□ 1
SNAI3Q3KNW1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNAI3Q3KNW1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.32■■□□□ 1
SNAI3Q3KNW1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.32■■□□□ 1
SNAI3Q3KNW1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNAI3Q3KNW1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.31■■□□□ 1
SNAI3Q3KNW1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SNAI3Q3KNW1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNAI3Q3KNW1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.3■■□□□ 1
SNAI3Q3KNW1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SNAI3Q3KNW1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SNAI3Q3KNW1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.3■■□□□ 1
SNAI3Q3KNW1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SNAI3Q3KNW1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNAI3Q3KNW1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.29■■□□□ 1
SNAI3Q3KNW1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
SNAI3Q3KNW1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNAI3Q3KNW1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNAI3Q3KNW1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNAI3Q3KNW1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.28■■□□□ 1
SNAI3Q3KNW1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.27■■□□□ 1
SNAI3Q3KNW1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.27■■□□□ 1
SNAI3Q3KNW1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SNAI3Q3KNW1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNAI3Q3KNW1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNAI3Q3KNW1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SNAI3Q3KNW1 AC092803.2-201ENST00000564287 1899 ntBASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNAI3Q3KNW1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SNAI3Q3KNW1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
SNAI3Q3KNW1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SNAI3Q3KNW1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNAI3Q3KNW1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SNAI3Q3KNW1 AC145676.1-201ENST00000514988 2004 ntBASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNAI3Q3KNW1 MIR639-201ENST00000384974 98 ntBASIC21.23■□□□□ 0.99
SNAI3Q3KNW1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 AL359504.2-201ENST00000605506 1601 ntBASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.22■□□□□ 0.99
SNAI3Q3KNW1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 AC126177.7-201ENST00000547904 679 ntBASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNAI3Q3KNW1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SNAI3Q3KNW1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNAI3Q3KNW1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 DUSP8P4-201ENST00000399538 1761 ntBASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNAI3Q3KNW1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.17■□□□□ 0.98
SNAI3Q3KNW1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
SNAI3Q3KNW1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms