Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH3P20585 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH3P20585 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
MSH3P20585 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.4■■□□□ 1.5
MSH3P20585 HSD17B1P1-201ENST00000590052 955 ntBASIC24.4■■□□□ 1.5
MSH3P20585 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
MSH3P20585 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH3P20585 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH3P20585 AL157400.5-201ENST00000507624 621 ntBASIC24.38■■□□□ 1.49
MSH3P20585 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 AC092296.2-201ENST00000589470 999 ntBASIC24.38■■□□□ 1.49
MSH3P20585 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH3P20585 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH3P20585 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH3P20585 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH3P20585 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
MSH3P20585 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH3P20585 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH3P20585 AP004609.3-201ENST00000610705 1884 ntBASIC24.36■■□□□ 1.49
MSH3P20585 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH3P20585 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH3P20585 ECEL1P2-201ENST00000461596 1295 ntBASIC24.35■■□□□ 1.49
MSH3P20585 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH3P20585 AL359504.2-201ENST00000605506 1601 ntBASIC24.35■■□□□ 1.49
MSH3P20585 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
MSH3P20585 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH3P20585 RNF126P1-201ENST00000567452 1320 ntBASIC24.34■■□□□ 1.49
MSH3P20585 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.33■■□□□ 1.49
MSH3P20585 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH3P20585 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
MSH3P20585 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.33■■□□□ 1.48
MSH3P20585 AC142472.1-201ENST00000612013 1741 ntBASIC24.32■■□□□ 1.48
MSH3P20585 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.32■■□□□ 1.48
MSH3P20585 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH3P20585 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
MSH3P20585 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH3P20585 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH3P20585 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH3P20585 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH3P20585 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.3■■□□□ 1.48
MSH3P20585 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH3P20585 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH3P20585 SMPD5-203ENST00000639008 1464 ntBASIC24.28■■□□□ 1.48
MSH3P20585 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH3P20585 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH3P20585 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH3P20585 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH3P20585 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH3P20585 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 RARRES2P2-201ENST00000394842 485 ntBASIC24.25■■□□□ 1.47
MSH3P20585 AC025884.2-201ENST00000553429 711 ntBASIC24.25■■□□□ 1.47
MSH3P20585 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH3P20585 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH3P20585 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH3P20585 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
MSH3P20585 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
MSH3P20585 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH3P20585 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH3P20585 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
MSH3P20585 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH3P20585 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH3P20585 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.22■■□□□ 1.47
MSH3P20585 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH3P20585 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH3P20585 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.21■■□□□ 1.47
MSH3P20585 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.21■■□□□ 1.47
MSH3P20585 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH3P20585 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
MSH3P20585 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms