Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 AC142472.1-201ENST00000612013 1741 ntBASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.33■□□□□ 0.69
TRAV41A0A0B4J266 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV41A0A0B4J266 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV41A0A0B4J266 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV41A0A0B4J266 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV41A0A0B4J266 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV41A0A0B4J266 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAV41A0A0B4J266 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV41A0A0B4J266 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV41A0A0B4J266 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV41A0A0B4J266 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV41A0A0B4J266 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV41A0A0B4J266 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV41A0A0B4J266 SMPD5-203ENST00000639008 1464 ntBASIC19.31■□□□□ 0.68
TRAV41A0A0B4J266 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV41A0A0B4J266 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV41A0A0B4J266 AL121749.1-202ENST00000609313 2153 ntBASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV41A0A0B4J266 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV41A0A0B4J266 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV41A0A0B4J266 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TRAV41A0A0B4J266 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 RARRES2P2-201ENST00000394842 485 ntBASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV41A0A0B4J266 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV41A0A0B4J266 AC025884.2-201ENST00000553429 711 ntBASIC19.27■□□□□ 0.68
TRAV41A0A0B4J266 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV41A0A0B4J266 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.27■□□□□ 0.67
TRAV41A0A0B4J266 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRAV41A0A0B4J266 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 MIR3960-201ENST00000583311 91 ntBASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV41A0A0B4J266 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV41A0A0B4J266 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 AC007029.1-201ENST00000604183 313 ntBASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
TRAV41A0A0B4J266 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV41A0A0B4J266 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV41A0A0B4J266 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV41A0A0B4J266 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms