Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.61□□□□□ -1.513e-6■□□□□ 9.5
DDX55Q8NHQ9 TOMM20-201ENST00000366607 3387 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.516e-8■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-208ENST00000456210 2065 ntTSL 219.77■□□□□ 0.751e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.64■□□□□ 0.731e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.511e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.461e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-207ENST00000441915 2710 ntTSL 1 (best)17.15■□□□□ 0.341e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.321e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-214ENST00000619119 3158 ntTSL 516.67■□□□□ 0.261e-12■□□□□ 9.5
DDX55Q8NHQ9 SEMA3B-203ENST00000419007 3283 ntTSL 215.58■□□□□ 0.091e-12■□□□□ 9.5
DDX55Q8NHQ9 JUND-202ENST00000600972 500 ntTSL 230.19■■■□□ 2.422e-15■□□□□ 9.5
DDX55Q8NHQ9 CKB-203ENST00000553610 542 ntTSL 321.15■□□□□ 0.983e-7■□□□□ 9.5
DDX55Q8NHQ9 CKB-211ENST00000555039 270 ntTSL 516.99■□□□□ 0.313e-7■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.86■■■□□ 2.212e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.9■■□□□ 1.92e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-207ENST00000554130 848 ntTSL 525.33■■□□□ 1.652e-10■□□□□ 9.5
DDX55Q8NHQ9 WDR59-214ENST00000568323 558 ntTSL 521.53■■□□□ 1.042e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-203ENST00000553357 585 ntTSL 521.4■■□□□ 1.022e-10■□□□□ 9.5
DDX55Q8NHQ9 WDR59-211ENST00000564859 488 ntTSL 320.51■□□□□ 0.872e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-205ENST00000553689 2267 ntTSL 1 (best)20.13■□□□□ 0.812e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.15■□□□□ 0.52e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16■□□□□ 0.152e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.112e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.52■□□□□ 0.082e-10■□□□□ 9.5
DDX55Q8NHQ9 WDR59-204ENST00000562331 570 ntTSL 412.46□□□□□ -0.412e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-209ENST00000548701 922 ntTSL 312.4□□□□□ -0.422e-10■□□□□ 9.5
DDX55Q8NHQ9 WDR59-223ENST00000616369 1953 ntTSL 1 (best) BASIC12.39□□□□□ -0.432e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-201ENST00000420613 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.682e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-206ENST00000548147 1514 ntTSL 210.63□□□□□ -0.712e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-210ENST00000549463 650 ntTSL 59.49□□□□□ -0.892e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-202ENST00000546701 1881 ntTSL 29.43□□□□□ -0.92e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-211ENST00000549574 1625 ntTSL 58.8□□□□□ -12e-10■□□□□ 9.5
DDX55Q8NHQ9 KANSL2-203ENST00000547087 831 ntTSL 37.37□□□□□ -1.232e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.32e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.08□□□□□ -1.442e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.37□□□□□ -1.552e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-208ENST00000478188 3093 ntTSL 25.23□□□□□ -1.572e-10■□□□□ 9.5
DDX55Q8NHQ9 CCT4-202ENST00000461370 388 ntTSL 25.23□□□□□ -1.572e-10■□□□□ 9.5
DDX55Q8NHQ9 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.592e-10■□□□□ 9.5
DDX55Q8NHQ9 PAPOLA-210ENST00000554887 547 ntTSL 44.29□□□□□ -1.722e-10■□□□□ 9.5
DDX55Q8NHQ9 RFC4-202ENST00000392481 1448 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.15e-6■□□□□ 9.5
DDX55Q8NHQ9 RFC4-201ENST00000296273 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.285e-6■□□□□ 9.5
DDX55Q8NHQ9 RFC4-207ENST00000433496 1111 ntTSL 5 BASIC11.89□□□□□ -0.515e-6■□□□□ 9.5
DDX55Q8NHQ9 RFC4-204ENST00000417876 479 ntTSL 26.49□□□□□ -1.375e-6■□□□□ 9.5
DDX55Q8NHQ9 RFC4-212ENST00000479307 1043 ntTSL 26.36□□□□□ -1.395e-6■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC34.64■■■■□ 3.142e-6■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.42e-6■□□□□ 9.5
DDX55Q8NHQ9 TBCB-208ENST00000588385 776 ntTSL 1 (best)24.36■■□□□ 1.492e-6■□□□□ 9.5
DDX55Q8NHQ9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC24.1■■□□□ 1.452e-6■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-206ENST00000480182 480 ntTSL 1 (best)23.32■■□□□ 1.322e-6■□□□□ 9.5
DDX55Q8NHQ9 PCED1A-204ENST00000448755 1170 ntTSL 322.98■■□□□ 1.273e-9■□□□□ 9.5
DDX55Q8NHQ9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.262e-6■□□□□ 9.5
DDX55Q8NHQ9 ZFP36-202ENST00000594442 1699 ntAPPRIS ALT2 TSL 521.68■■□□□ 1.062e-6■□□□□ 9.5
DDX55Q8NHQ9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.992e-6■□□□□ 9.5
DDX55Q8NHQ9 BHLHE40-203ENST00000467610 1366 ntTSL 221.22■□□□□ 0.992e-6■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-203ENST00000425361 455 ntAPPRIS ALT2 TSL 221.14■□□□□ 0.972e-6■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-204ENST00000455239 401 ntAPPRIS ALT2 TSL 220.96■□□□□ 0.952e-6■□□□□ 9.5
DDX55Q8NHQ9 FBXO31-204ENST00000565593 2717 ntTSL 520.41■□□□□ 0.862e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.823e-11■□□□□ 9.5
DDX55Q8NHQ9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.822e-6■□□□□ 9.5
DDX55Q8NHQ9 TBCB-206ENST00000585910 656 ntTSL 220.04■□□□□ 0.82e-6■□□□□ 9.5
DDX55Q8NHQ9 ACY1-228ENST00000638096 1466 nt20.02■□□□□ 0.85e-7■□□□□ 9.5
DDX55Q8NHQ9 PCED1A-203ENST00000439542 1187 ntTSL 219.75■□□□□ 0.753e-9■□□□□ 9.5
DDX55Q8NHQ9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.64■□□□□ 0.732e-6■□□□□ 9.5
DDX55Q8NHQ9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.2■□□□□ 0.662e-6■□□□□ 9.5
DDX55Q8NHQ9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.78■□□□□ 0.63e-9■□□□□ 9.5
DDX55Q8NHQ9 KLC4-208ENST00000463168 502 ntTSL 318.68■□□□□ 0.582e-6■□□□□ 9.5
DDX55Q8NHQ9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.552e-6■□□□□ 9.5
DDX55Q8NHQ9 ACY1-224ENST00000637349 703 ntTSL 518.48■□□□□ 0.555e-7■□□□□ 9.5
DDX55Q8NHQ9 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.22■□□□□ 0.512e-6■□□□□ 9.5
DDX55Q8NHQ9 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18■□□□□ 0.472e-6■□□□□ 9.5
DDX55Q8NHQ9 ERBB2-214ENST00000583038 4930 ntTSL 217.98■□□□□ 0.473e-9■□□□□ 9.5
DDX55Q8NHQ9 WDR45B-205ENST00000572583 2322 ntTSL 1 (best)17.78■□□□□ 0.445e-12■□□□□ 9.5
DDX55Q8NHQ9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.42e-6■□□□□ 9.5
DDX55Q8NHQ9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.392e-6■□□□□ 9.5
DDX55Q8NHQ9 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.382e-6■□□□□ 9.5
DDX55Q8NHQ9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.355e-12■□□□□ 9.5
DDX55Q8NHQ9 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.352e-6■□□□□ 9.5
DDX55Q8NHQ9 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.352e-6■□□□□ 9.5
DDX55Q8NHQ9 ACY1-203ENST00000465121 1600 ntTSL 217.21■□□□□ 0.355e-7■□□□□ 9.5
DDX55Q8NHQ9 MZT2B-205ENST00000457492 435 ntAPPRIS ALT2 TSL 517.13■□□□□ 0.332e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-206ENST00000478698 1507 ntTSL 217.04■□□□□ 0.323e-11■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-210ENST00000490442 1521 ntTSL 217.04■□□□□ 0.323e-11■□□□□ 9.5
DDX55Q8NHQ9 CD276-210ENST00000560928 2181 ntTSL 216.93■□□□□ 0.32e-6■□□□□ 9.5
DDX55Q8NHQ9 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.212e-6■□□□□ 9.5
DDX55Q8NHQ9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.29■□□□□ 0.23e-9■□□□□ 9.5
DDX55Q8NHQ9 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.192e-6■□□□□ 9.5
DDX55Q8NHQ9 SPG7-203ENST00000561702 2042 ntTSL 216.04■□□□□ 0.162e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-207ENST00000480987 752 ntTSL 415.94■□□□□ 0.142e-6■□□□□ 9.5
DDX55Q8NHQ9 BRD2-213ENST00000495733 3404 ntTSL 215.77■□□□□ 0.123e-6■□□□□ 9.5
DDX55Q8NHQ9 NDUFC1-208ENST00000513022 564 ntTSL 415.37■□□□□ 0.052e-6■□□□□ 9.5
DDX55Q8NHQ9 ABHD14A-ACY1-205ENST00000635785 1060 ntTSL 515.16■□□□□ 0.025e-7■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -03e-11■□□□□ 9.5
DDX55Q8NHQ9 DDIT3-203ENST00000547526 644 ntTSL 315.02■□□□□ -02e-6■□□□□ 9.5
DDX55Q8NHQ9 ERCC3-202ENST00000426778 2916 ntTSL 214.82□□□□□ -0.042e-6■□□□□ 9.5
DDX55Q8NHQ9 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)14.75□□□□□ -0.053e-11■□□□□ 9.5
DDX55Q8NHQ9 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.063e-9■□□□□ 9.5
DDX55Q8NHQ9 ERCC3-203ENST00000445889 2920 ntTSL 214.59□□□□□ -0.072e-6■□□□□ 9.5
DDX55Q8NHQ9 RPL34-207ENST00000506397 549 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.093e-9■□□□□ 9.5
DDX55Q8NHQ9 ERBB2-210ENST00000580074 754 ntTSL 314.37□□□□□ -0.113e-9■□□□□ 9.5
Retrieved 100 of 15,504 protein–RNA pairs in 179.8 ms