Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 AC133963.1-201ENST00000504166 1679 ntBASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 MIR572-201ENST00000384983 95 ntBASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 TNRC18P2-201ENST00000417666 2714 ntBASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CLRN3Q8NCR9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
CLRN3Q8NCR9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms