Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.35■□□□□ 0.05
CD40P25942 AC104581.1-202ENST00000635932 2618 ntBASIC15.35■□□□□ 0.05
CD40P25942 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.35■□□□□ 0.05
CD40P25942 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
CD40P25942 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CD40P25942 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.34■□□□□ 0.05
CD40P25942 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.34■□□□□ 0.05
CD40P25942 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.34■□□□□ 0.05
CD40P25942 AC009113.1-201ENST00000570267 2443 ntBASIC15.34■□□□□ 0.05
CD40P25942 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.34■□□□□ 0.05
CD40P25942 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CD40P25942 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.34■□□□□ 0.05
CD40P25942 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.34■□□□□ 0.05
CD40P25942 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 COX5BP2-201ENST00000392354 334 ntBASIC15.34■□□□□ 0.05
CD40P25942 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.34■□□□□ 0.05
CD40P25942 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 AC073648.2-201ENST00000510116 352 ntBASIC15.34■□□□□ 0.05
CD40P25942 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CD40P25942 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.34■□□□□ 0.05
CD40P25942 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.05
CD40P25942 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CD40P25942 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CD40P25942 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.33■□□□□ 0.04
CD40P25942 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.33■□□□□ 0.04
CD40P25942 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.33■□□□□ 0.04
CD40P25942 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.33■□□□□ 0.04
CD40P25942 RNPS1P1-201ENST00000507437 918 ntBASIC15.33■□□□□ 0.04
CD40P25942 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.33■□□□□ 0.04
CD40P25942 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.33■□□□□ 0.04
CD40P25942 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.33■□□□□ 0.04
CD40P25942 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.33■□□□□ 0.04
CD40P25942 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.33■□□□□ 0.04
CD40P25942 AP001005.1-201ENST00000571755 1248 ntBASIC15.33■□□□□ 0.04
CD40P25942 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.33■□□□□ 0.04
CD40P25942 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.33■□□□□ 0.04
CD40P25942 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 HLA-A-201ENST00000376802 1334 ntBASIC15.33■□□□□ 0.04
CD40P25942 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.33■□□□□ 0.04
CD40P25942 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CD40P25942 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.33■□□□□ 0.04
CD40P25942 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.32■□□□□ 0.04
CD40P25942 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CD40P25942 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CD40P25942 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.32■□□□□ 0.04
CD40P25942 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CD40P25942 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.32■□□□□ 0.04
CD40P25942 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms