Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.66■□□□□ 0.26
CACNA1AO00555 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.66■□□□□ 0.26
CACNA1AO00555 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.66■□□□□ 0.26
CACNA1AO00555 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CACNA1AO00555 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
CACNA1AO00555 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.66■□□□□ 0.26
CACNA1AO00555 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 SDHAP2-201ENST00000455183 2001 ntBASIC16.66■□□□□ 0.26
CACNA1AO00555 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
CACNA1AO00555 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 AC241585.1-201ENST00000433527 519 ntBASIC16.65■□□□□ 0.26
CACNA1AO00555 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.65■□□□□ 0.26
CACNA1AO00555 SNX29P1-201ENST00000548357 1007 ntBASIC16.65■□□□□ 0.26
CACNA1AO00555 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.65■□□□□ 0.26
CACNA1AO00555 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.65■□□□□ 0.26
CACNA1AO00555 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 IRX1P1-201ENST00000438849 1838 ntBASIC16.65■□□□□ 0.26
CACNA1AO00555 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.65■□□□□ 0.26
CACNA1AO00555 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CACNA1AO00555 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CACNA1AO00555 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CACNA1AO00555 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CACNA1AO00555 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CACNA1AO00555 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CACNA1AO00555 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.64■□□□□ 0.25
CACNA1AO00555 DFFBP1-201ENST00000433250 979 ntBASIC16.64■□□□□ 0.25
CACNA1AO00555 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.64■□□□□ 0.25
CACNA1AO00555 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.64■□□□□ 0.25
CACNA1AO00555 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CACNA1AO00555 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.64■□□□□ 0.25
CACNA1AO00555 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.64■□□□□ 0.25
CACNA1AO00555 MIR4259-201ENST00000584466 101 ntBASIC16.64■□□□□ 0.25
CACNA1AO00555 AL109936.8-201ENST00000641772 604 ntBASIC16.64■□□□□ 0.25
CACNA1AO00555 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.64■□□□□ 0.25
CACNA1AO00555 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CACNA1AO00555 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CACNA1AO00555 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CACNA1AO00555 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CACNA1AO00555 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.63■□□□□ 0.25
CACNA1AO00555 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.63■□□□□ 0.25
CACNA1AO00555 AC009477.1-201ENST00000452936 217 ntBASIC16.63■□□□□ 0.25
CACNA1AO00555 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.63■□□□□ 0.25
CACNA1AO00555 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CACNA1AO00555 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 AL391825.1-201ENST00000457671 1364 ntBASIC16.63■□□□□ 0.25
CACNA1AO00555 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.63■□□□□ 0.25
CACNA1AO00555 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 AC140658.5-201ENST00000438532 169 ntBASIC16.63■□□□□ 0.25
CACNA1AO00555 AC253536.4-201ENST00000440539 267 ntBASIC16.63■□□□□ 0.25
CACNA1AO00555 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.63■□□□□ 0.25
CACNA1AO00555 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.63■□□□□ 0.25
CACNA1AO00555 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CACNA1AO00555 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CACNA1AO00555 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.62■□□□□ 0.25
CACNA1AO00555 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CACNA1AO00555 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms