Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 AC003669.1-201ENST00000334569 611 ntBASIC22.49■■□□□ 1.19
RC3H1Q5TC82 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 PNMT-202ENST00000394246 821 ntTSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.49■■□□□ 1.19
RC3H1Q5TC82 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.48■■□□□ 1.19
RC3H1Q5TC82 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 KLF4P1-201ENST00000412782 1185 ntBASIC22.48■■□□□ 1.19
RC3H1Q5TC82 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 RHOQP3-201ENST00000437982 621 ntBASIC22.48■■□□□ 1.19
RC3H1Q5TC82 S100A2-206ENST00000497140 697 ntTSL 2 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 AC027612.4-201ENST00000605371 583 ntBASIC22.48■■□□□ 1.19
RC3H1Q5TC82 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
RC3H1Q5TC82 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 MRPL20P1-201ENST00000400819 433 ntBASIC22.47■■□□□ 1.19
RC3H1Q5TC82 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 AC019129.2-201ENST00000609837 1235 ntBASIC22.47■■□□□ 1.19
RC3H1Q5TC82 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.47■■□□□ 1.19
RC3H1Q5TC82 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 PHGDH-209ENST00000641074 1780 ntBASIC22.46■■□□□ 1.19
RC3H1Q5TC82 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 FAM8A3P-201ENST00000427218 844 ntBASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 PUS1-205ENST00000535067 838 ntTSL 3 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AC092364.2-202ENST00000597012 1073 ntBASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AQP6-205ENST00000618286 829 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AC004877.2-201ENST00000623941 599 ntBASIC22.46■■□□□ 1.19
RC3H1Q5TC82 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms