Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
LIM2P55344 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LIM2P55344 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LIM2P55344 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 IER3-202ENST00000376377 1350 ntBASIC17.06■□□□□ 0.32
LIM2P55344 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.06■□□□□ 0.32
LIM2P55344 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LIM2P55344 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.06■□□□□ 0.32
LIM2P55344 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.06■□□□□ 0.32
LIM2P55344 TSPY12P-201ENST00000421279 868 ntBASIC17.06■□□□□ 0.32
LIM2P55344 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 AL358472.4-201ENST00000633140 710 ntBASIC17.06■□□□□ 0.32
LIM2P55344 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.06■□□□□ 0.32
LIM2P55344 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.06■□□□□ 0.32
LIM2P55344 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
LIM2P55344 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIM2P55344 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LIM2P55344 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.05■□□□□ 0.32
LIM2P55344 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.05■□□□□ 0.32
LIM2P55344 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
LIM2P55344 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 KRT18P65-201ENST00000439811 1286 ntBASIC17.05■□□□□ 0.32
LIM2P55344 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
LIM2P55344 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.05■□□□□ 0.32
LIM2P55344 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.05■□□□□ 0.32
LIM2P55344 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LIM2P55344 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.05■□□□□ 0.32
LIM2P55344 AP000550.4-202ENST00000639755 178 ntBASIC17.05■□□□□ 0.32
LIM2P55344 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.05■□□□□ 0.32
LIM2P55344 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
LIM2P55344 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIM2P55344 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.04■□□□□ 0.32
LIM2P55344 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LIM2P55344 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.04■□□□□ 0.32
LIM2P55344 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.04■□□□□ 0.32
LIM2P55344 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIM2P55344 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIM2P55344 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.04■□□□□ 0.32
LIM2P55344 KRT8P26-201ENST00000534154 1276 ntBASIC17.04■□□□□ 0.32
LIM2P55344 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.04■□□□□ 0.32
LIM2P55344 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.04■□□□□ 0.32
LIM2P55344 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIM2P55344 AC009154.2-201ENST00000621177 724 ntBASIC17.04■□□□□ 0.32
LIM2P55344 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.04■□□□□ 0.32
LIM2P55344 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms