Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 ESPNP-201ENST00000270691 2015 ntBASIC34■■■■□ 3.03
SHROOM4Q9ULL8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 AC023274.1-201ENST00000418278 595 ntBASIC34■■■■□ 3.03
SHROOM4Q9ULL8 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 AC009154.2-201ENST00000621177 724 ntBASIC34■■■■□ 3.03
SHROOM4Q9ULL8 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC34■■■■□ 3.03
SHROOM4Q9ULL8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 AC005829.1-201ENST00000570002 483 ntBASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 AC027612.4-201ENST00000605371 583 ntBASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC33.99■■■■□ 3.03
SHROOM4Q9ULL8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM4Q9ULL8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 MKNK2P1-201ENST00000437526 628 ntBASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 COX20P2-201ENST00000452636 358 ntBASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 AL596442.2-201ENST00000610240 980 ntBASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 MIR1199-201ENST00000621445 119 ntBASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC33.97■■■■□ 3.03
SHROOM4Q9ULL8 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 HLA-J-203ENST00000494367 1087 ntBASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC33.96■■■■□ 3.03
SHROOM4Q9ULL8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC33.95■■■■□ 3.03
SHROOM4Q9ULL8 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC33.95■■■■□ 3.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms