Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SF3A1Q15459 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
SF3A1Q15459 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 HMGA1P5-201ENST00000412453 271 ntBASIC20.85■□□□□ 0.93
SF3A1Q15459 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.85■□□□□ 0.93
SF3A1Q15459 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.85■□□□□ 0.93
SF3A1Q15459 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.85■□□□□ 0.93
SF3A1Q15459 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SF3A1Q15459 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.84■□□□□ 0.93
SF3A1Q15459 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.84■□□□□ 0.93
SF3A1Q15459 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.84■□□□□ 0.93
SF3A1Q15459 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.84■□□□□ 0.93
SF3A1Q15459 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.84■□□□□ 0.93
SF3A1Q15459 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SF3A1Q15459 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SF3A1Q15459 LINC01568-207ENST00000641790 1380 ntBASIC20.84■□□□□ 0.93
SF3A1Q15459 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
SF3A1Q15459 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 LINC00896-202ENST00000609602 2128 ntBASIC20.83■□□□□ 0.93
SF3A1Q15459 AC093010.1-201ENST00000473625 1624 ntBASIC20.83■□□□□ 0.93
SF3A1Q15459 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SF3A1Q15459 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.83■□□□□ 0.93
SF3A1Q15459 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.83■□□□□ 0.93
SF3A1Q15459 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.83■□□□□ 0.93
SF3A1Q15459 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.83■□□□□ 0.93
SF3A1Q15459 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.83■□□□□ 0.93
SF3A1Q15459 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.83■□□□□ 0.93
SF3A1Q15459 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SF3A1Q15459 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SF3A1Q15459 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SF3A1Q15459 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.83■□□□□ 0.92
SF3A1Q15459 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
SF3A1Q15459 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
SF3A1Q15459 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.83■□□□□ 0.92
SF3A1Q15459 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SF3A1Q15459 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
SF3A1Q15459 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SF3A1Q15459 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.82■□□□□ 0.92
SF3A1Q15459 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.82■□□□□ 0.92
SF3A1Q15459 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.82■□□□□ 0.92
SF3A1Q15459 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms