Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18■□□□□ 0.47
XRCC1P18887 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18■□□□□ 0.47
XRCC1P18887 AL645929.1-201ENST00000420084 975 ntBASIC18■□□□□ 0.47
XRCC1P18887 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
XRCC1P18887 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18■□□□□ 0.47
XRCC1P18887 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
XRCC1P18887 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18■□□□□ 0.47
XRCC1P18887 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18■□□□□ 0.47
XRCC1P18887 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18■□□□□ 0.47
XRCC1P18887 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 PRORSD1P-202ENST00000563365 2154 ntBASIC18■□□□□ 0.47
XRCC1P18887 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18■□□□□ 0.47
XRCC1P18887 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC1P18887 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.99■□□□□ 0.47
XRCC1P18887 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 KRT8P50-201ENST00000562022 1438 ntBASIC17.99■□□□□ 0.47
XRCC1P18887 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
XRCC1P18887 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.99■□□□□ 0.47
XRCC1P18887 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
XRCC1P18887 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 MIR662-201ENST00000384847 95 ntBASIC17.99■□□□□ 0.47
XRCC1P18887 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.99■□□□□ 0.47
XRCC1P18887 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.99■□□□□ 0.47
XRCC1P18887 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC1P18887 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
XRCC1P18887 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC1P18887 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
XRCC1P18887 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.98■□□□□ 0.47
XRCC1P18887 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC1P18887 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.98■□□□□ 0.47
XRCC1P18887 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.98■□□□□ 0.47
XRCC1P18887 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.98■□□□□ 0.47
XRCC1P18887 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC1P18887 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
XRCC1P18887 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 AC009053.2-201ENST00000563701 2365 ntBASIC17.98■□□□□ 0.47
XRCC1P18887 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC1P18887 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
XRCC1P18887 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC1P18887 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC1P18887 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC1P18887 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC1P18887 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.97■□□□□ 0.47
XRCC1P18887 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms