Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CPNE4Q96A23 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPNE4Q96A23 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 CHCHD2P8-201ENST00000429873 447 ntBASIC16.23■□□□□ 0.19
CPNE4Q96A23 TSSC2-201ENST00000450217 709 ntBASIC16.23■□□□□ 0.19
CPNE4Q96A23 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 GUSBP12-201ENST00000513727 720 ntBASIC16.23■□□□□ 0.19
CPNE4Q96A23 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.23■□□□□ 0.19
CPNE4Q96A23 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPNE4Q96A23 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CPNE4Q96A23 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPNE4Q96A23 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.21■□□□□ 0.19
CPNE4Q96A23 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPNE4Q96A23 TSPY12P-201ENST00000421279 868 ntBASIC16.21■□□□□ 0.19
CPNE4Q96A23 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.21■□□□□ 0.19
CPNE4Q96A23 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.21■□□□□ 0.19
CPNE4Q96A23 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms