Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 AC092865.7-201ENST00000641832 219 ntBASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 AC134043.2-201ENST00000624206 2238 ntBASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 AC087499.1-201ENST00000418141 1075 ntBASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ECEL1P3-201ENST00000427961 737 ntBASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 SLC25A6P5-201ENST00000435663 894 ntBASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC40Q4G0X9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 AP000523.1-201ENST00000398242 1049 ntBASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC40Q4G0X9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 GNAS-203ENST00000306120 1878 ntBASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 MIR3917-201ENST00000580971 93 ntBASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms