Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.57■□□□□ 0.24
MSX1P28360 TSSC2-201ENST00000450217 709 ntBASIC16.57■□□□□ 0.24
MSX1P28360 AP003733.1-201ENST00000491725 852 ntBASIC16.57■□□□□ 0.24
MSX1P28360 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.57■□□□□ 0.24
MSX1P28360 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.57■□□□□ 0.24
MSX1P28360 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.57■□□□□ 0.24
MSX1P28360 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.57■□□□□ 0.24
MSX1P28360 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.57■□□□□ 0.24
MSX1P28360 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MSX1P28360 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MSX1P28360 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX1P28360 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MSX1P28360 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX1P28360 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MSX1P28360 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.56■□□□□ 0.24
MSX1P28360 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX1P28360 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.56■□□□□ 0.24
MSX1P28360 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.56■□□□□ 0.24
MSX1P28360 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX1P28360 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX1P28360 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX1P28360 AC011498.5-201ENST00000592027 486 ntBASIC16.56■□□□□ 0.24
MSX1P28360 AL121672.3-201ENST00000608644 468 ntBASIC16.56■□□□□ 0.24
MSX1P28360 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 BICD1-207ENST00000551848 1962 ntBASIC16.56■□□□□ 0.24
MSX1P28360 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 PHGDH-209ENST00000641074 1780 ntBASIC16.56■□□□□ 0.24
MSX1P28360 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX1P28360 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MSX1P28360 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 BX276092.5-203ENST00000456199 560 ntBASIC16.55■□□□□ 0.24
MSX1P28360 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.55■□□□□ 0.24
MSX1P28360 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MSX1P28360 AC111152.3-201ENST00000569699 673 ntBASIC16.55■□□□□ 0.24
MSX1P28360 RN7SL510P-201ENST00000581311 263 ntBASIC16.55■□□□□ 0.24
MSX1P28360 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.55■□□□□ 0.24
MSX1P28360 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 AC093010.1-201ENST00000473625 1624 ntBASIC16.55■□□□□ 0.24
MSX1P28360 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
MSX1P28360 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX1P28360 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX1P28360 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX1P28360 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX1P28360 AC104581.1-202ENST00000635932 2618 ntBASIC16.54■□□□□ 0.24
MSX1P28360 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.54■□□□□ 0.24
MSX1P28360 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX1P28360 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX1P28360 AC099343.3-201ENST00000605834 2503 ntBASIC16.54■□□□□ 0.24
MSX1P28360 AC135776.1-201ENST00000319817 2481 ntBASIC16.54■□□□□ 0.24
MSX1P28360 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms