Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
ZC3H4Q9UPT8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.58■■■□□ 2.49
ZC3H4Q9UPT8 MIR3960-201ENST00000583311 91 ntBASIC30.58■■■□□ 2.49
ZC3H4Q9UPT8 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
ZC3H4Q9UPT8 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.57■■■□□ 2.48
ZC3H4Q9UPT8 Z92544.1-202ENST00000571933 1220 ntBASIC30.57■■■□□ 2.48
ZC3H4Q9UPT8 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
ZC3H4Q9UPT8 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ZC3H4Q9UPT8 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
ZC3H4Q9UPT8 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
ZC3H4Q9UPT8 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.56■■■□□ 2.48
ZC3H4Q9UPT8 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
ZC3H4Q9UPT8 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
ZC3H4Q9UPT8 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
ZC3H4Q9UPT8 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
ZC3H4Q9UPT8 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
ZC3H4Q9UPT8 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
ZC3H4Q9UPT8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.54■■■□□ 2.48
ZC3H4Q9UPT8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
ZC3H4Q9UPT8 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZC3H4Q9UPT8 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZC3H4Q9UPT8 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
ZC3H4Q9UPT8 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
ZC3H4Q9UPT8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.52■■■□□ 2.48
ZC3H4Q9UPT8 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.52■■■□□ 2.48
ZC3H4Q9UPT8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
ZC3H4Q9UPT8 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.51■■■□□ 2.48
ZC3H4Q9UPT8 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
ZC3H4Q9UPT8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
ZC3H4Q9UPT8 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.5■■■□□ 2.47
ZC3H4Q9UPT8 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.5■■■□□ 2.47
ZC3H4Q9UPT8 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
ZC3H4Q9UPT8 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
ZC3H4Q9UPT8 MIR638-201ENST00000385237 100 ntBASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 AC239859.2-201ENST00000444165 318 ntBASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZC3H4Q9UPT8 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 AC019171.1-201ENST00000601251 1056 ntBASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
ZC3H4Q9UPT8 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZC3H4Q9UPT8 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.47■■■□□ 2.47
ZC3H4Q9UPT8 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZC3H4Q9UPT8 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
ZC3H4Q9UPT8 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
ZC3H4Q9UPT8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
ZC3H4Q9UPT8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.45■■■□□ 2.46
ZC3H4Q9UPT8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.44■■■□□ 2.46
ZC3H4Q9UPT8 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.44■■■□□ 2.46
ZC3H4Q9UPT8 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.43■■■□□ 2.46
ZC3H4Q9UPT8 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.42■■■□□ 2.46
ZC3H4Q9UPT8 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ZC3H4Q9UPT8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.42■■■□□ 2.46
ZC3H4Q9UPT8 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.42■■■□□ 2.46
ZC3H4Q9UPT8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.42■■■□□ 2.46
ZC3H4Q9UPT8 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC30.41■■■□□ 2.46
ZC3H4Q9UPT8 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
ZC3H4Q9UPT8 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
ZC3H4Q9UPT8 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
ZC3H4Q9UPT8 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.41■■■□□ 2.46
ZC3H4Q9UPT8 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.4■■■□□ 2.46
ZC3H4Q9UPT8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.4■■■□□ 2.46
ZC3H4Q9UPT8 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.4■■■□□ 2.46
ZC3H4Q9UPT8 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
ZC3H4Q9UPT8 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.39■■■□□ 2.46
ZC3H4Q9UPT8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
ZC3H4Q9UPT8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.39■■■□□ 2.46
ZC3H4Q9UPT8 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
ZC3H4Q9UPT8 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
ZC3H4Q9UPT8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
ZC3H4Q9UPT8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.37■■■□□ 2.45
ZC3H4Q9UPT8 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.36■■■□□ 2.45
ZC3H4Q9UPT8 AL135925.1-201ENST00000605920 1701 ntBASIC30.36■■■□□ 2.45
ZC3H4Q9UPT8 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
ZC3H4Q9UPT8 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
ZC3H4Q9UPT8 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
ZC3H4Q9UPT8 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
ZC3H4Q9UPT8 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
ZC3H4Q9UPT8 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
ZC3H4Q9UPT8 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
ZC3H4Q9UPT8 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms