Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.6■■□□□ 1.05
MMP28Q9H239 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.6■■□□□ 1.05
MMP28Q9H239 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MMP28Q9H239 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.59■■□□□ 1.05
MMP28Q9H239 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.59■■□□□ 1.05
MMP28Q9H239 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP28Q9H239 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MMP28Q9H239 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MMP28Q9H239 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
MMP28Q9H239 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.58■■□□□ 1.05
MMP28Q9H239 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.58■■□□□ 1.05
MMP28Q9H239 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.58■■□□□ 1.05
MMP28Q9H239 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
MMP28Q9H239 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MMP28Q9H239 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP28Q9H239 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP28Q9H239 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP28Q9H239 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.56■■□□□ 1.04
MMP28Q9H239 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.56■■□□□ 1.04
MMP28Q9H239 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
MMP28Q9H239 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MMP28Q9H239 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP28Q9H239 AL162393.1-201ENST00000437852 946 ntBASIC21.55■■□□□ 1.04
MMP28Q9H239 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.55■■□□□ 1.04
MMP28Q9H239 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
MMP28Q9H239 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
MMP28Q9H239 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP28Q9H239 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
MMP28Q9H239 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.54■■□□□ 1.04
MMP28Q9H239 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
MMP28Q9H239 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MMP28Q9H239 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.54■■□□□ 1.04
MMP28Q9H239 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MMP28Q9H239 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MMP28Q9H239 ERN1-208ENST00000606895 2068 ntBASIC21.54■■□□□ 1.04
MMP28Q9H239 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
MMP28Q9H239 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.53■■□□□ 1.04
MMP28Q9H239 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.53■■□□□ 1.04
MMP28Q9H239 AC005559.1-201ENST00000589661 871 ntBASIC21.53■■□□□ 1.04
MMP28Q9H239 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
MMP28Q9H239 AC092803.2-201ENST00000564287 1899 ntBASIC21.53■■□□□ 1.04
MMP28Q9H239 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
MMP28Q9H239 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
MMP28Q9H239 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
MMP28Q9H239 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MMP28Q9H239 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MMP28Q9H239 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.52■■□□□ 1.04
MMP28Q9H239 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MMP28Q9H239 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MMP28Q9H239 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MMP28Q9H239 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
MMP28Q9H239 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MMP28Q9H239 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
MMP28Q9H239 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
MMP28Q9H239 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.5■■□□□ 1.03
MMP28Q9H239 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
MMP28Q9H239 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MMP28Q9H239 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.5■■□□□ 1.03
MMP28Q9H239 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MMP28Q9H239 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
MMP28Q9H239 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MMP28Q9H239 AP006261.1-201ENST00000584783 668 ntBASIC21.49■■□□□ 1.03
MMP28Q9H239 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.49■■□□□ 1.03
MMP28Q9H239 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
MMP28Q9H239 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MMP28Q9H239 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MMP28Q9H239 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MMP28Q9H239 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.48■■□□□ 1.03
MMP28Q9H239 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
MMP28Q9H239 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.48■■□□□ 1.03
MMP28Q9H239 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MMP28Q9H239 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MMP28Q9H239 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MMP28Q9H239 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MMP28Q9H239 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MMP28Q9H239 MIR3665-201ENST00000578708 105 ntBASIC21.47■■□□□ 1.03
MMP28Q9H239 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MMP28Q9H239 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MMP28Q9H239 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MMP28Q9H239 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
MMP28Q9H239 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.46■■□□□ 1.03
MMP28Q9H239 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MMP28Q9H239 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
MMP28Q9H239 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
MMP28Q9H239 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms