Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.37■■□□□ 1.65
SYNPOQ8N3V7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.37■■□□□ 1.65
SYNPOQ8N3V7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.37■■□□□ 1.65
SYNPOQ8N3V7 BHLHE23-202ENST00000612929 1109 ntBASIC25.37■■□□□ 1.65
SYNPOQ8N3V7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SYNPOQ8N3V7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SYNPOQ8N3V7 MIR3960-201ENST00000583311 91 ntBASIC25.36■■□□□ 1.65
SYNPOQ8N3V7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.35■■□□□ 1.65
SYNPOQ8N3V7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SYNPOQ8N3V7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SYNPOQ8N3V7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SYNPOQ8N3V7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
SYNPOQ8N3V7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SYNPOQ8N3V7 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.32■■□□□ 1.64
SYNPOQ8N3V7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SYNPOQ8N3V7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SYNPOQ8N3V7 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.31■■□□□ 1.64
SYNPOQ8N3V7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 MIR6765-201ENST00000614092 87 ntBASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SYNPOQ8N3V7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.29■■□□□ 1.64
SYNPOQ8N3V7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
SYNPOQ8N3V7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SYNPOQ8N3V7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SYNPOQ8N3V7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
SYNPOQ8N3V7 AC139795.1-202ENST00000500444 432 ntBASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 AC010980.1-201ENST00000587192 1142 ntBASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SYNPOQ8N3V7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SYNPOQ8N3V7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.27■■□□□ 1.64
SYNPOQ8N3V7 SPCS2P3-201ENST00000500401 656 ntBASIC25.27■■□□□ 1.64
SYNPOQ8N3V7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
SYNPOQ8N3V7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.27■■□□□ 1.64
SYNPOQ8N3V7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
SYNPOQ8N3V7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.26■■□□□ 1.63
SYNPOQ8N3V7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.26■■□□□ 1.63
SYNPOQ8N3V7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SYNPOQ8N3V7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.25■■□□□ 1.63
SYNPOQ8N3V7 AC018755.3-202ENST00000596210 929 ntBASIC25.25■■□□□ 1.63
SYNPOQ8N3V7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.25■■□□□ 1.63
SYNPOQ8N3V7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SYNPOQ8N3V7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 YBX1P4-201ENST00000392794 808 ntBASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SYNPOQ8N3V7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
SYNPOQ8N3V7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SYNPOQ8N3V7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SYNPOQ8N3V7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SYNPOQ8N3V7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
SYNPOQ8N3V7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.21■■□□□ 1.63
SYNPOQ8N3V7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SYNPOQ8N3V7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.21■■□□□ 1.63
SYNPOQ8N3V7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SYNPOQ8N3V7 KRT8P33-201ENST00000508125 1423 ntBASIC25.2■■□□□ 1.63
SYNPOQ8N3V7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SYNPOQ8N3V7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SYNPOQ8N3V7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.2■■□□□ 1.62
SYNPOQ8N3V7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SYNPOQ8N3V7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 AC009299.2-201ENST00000482477 511 ntBASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
SYNPOQ8N3V7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
SYNPOQ8N3V7 AP002414.2-202ENST00000590929 1450 ntBASIC25.18■■□□□ 1.62
SYNPOQ8N3V7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms