Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NUP98P52948 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NUP98P52948 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NUP98P52948 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NUP98P52948 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.39■■■□□ 2.62
NUP98P52948 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
NUP98P52948 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
NUP98P52948 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.39■■■□□ 2.62
NUP98P52948 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.39■■■□□ 2.62
NUP98P52948 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
NUP98P52948 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
NUP98P52948 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
NUP98P52948 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.38■■■□□ 2.61
NUP98P52948 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
NUP98P52948 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.38■■■□□ 2.61
NUP98P52948 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
NUP98P52948 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
NUP98P52948 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NUP98P52948 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
NUP98P52948 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NUP98P52948 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.38■■■□□ 2.61
NUP98P52948 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.38■■■□□ 2.61
NUP98P52948 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.38■■■□□ 2.61
NUP98P52948 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.37■■■□□ 2.61
NUP98P52948 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
NUP98P52948 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
NUP98P52948 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NUP98P52948 DUX4L18-201ENST00000553347 1267 ntBASIC31.36■■■□□ 2.61
NUP98P52948 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
NUP98P52948 WHAMMP3-201ENST00000611636 1609 ntBASIC31.36■■■□□ 2.61
NUP98P52948 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
NUP98P52948 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NUP98P52948 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.35■■■□□ 2.61
NUP98P52948 MIR3960-201ENST00000583311 91 ntBASIC31.35■■■□□ 2.61
NUP98P52948 AL451085.2-201ENST00000605085 799 ntBASIC31.35■■■□□ 2.61
NUP98P52948 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.35■■■□□ 2.61
NUP98P52948 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.35■■■□□ 2.61
NUP98P52948 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.35■■■□□ 2.61
NUP98P52948 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
NUP98P52948 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.35■■■□□ 2.61
NUP98P52948 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NUP98P52948 AL359504.2-201ENST00000605506 1601 ntBASIC31.33■■■□□ 2.61
NUP98P52948 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.33■■■□□ 2.61
NUP98P52948 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.61
NUP98P52948 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NUP98P52948 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
NUP98P52948 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.32■■■□□ 2.6
NUP98P52948 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NUP98P52948 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NUP98P52948 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NUP98P52948 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
NUP98P52948 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NUP98P52948 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
NUP98P52948 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.3■■■□□ 2.6
NUP98P52948 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
NUP98P52948 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NUP98P52948 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.29■■■□□ 2.6
NUP98P52948 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.29■■■□□ 2.6
NUP98P52948 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NUP98P52948 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
NUP98P52948 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
NUP98P52948 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.27■■■□□ 2.6
NUP98P52948 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NUP98P52948 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
NUP98P52948 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NUP98P52948 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NUP98P52948 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.26■■■□□ 2.59
NUP98P52948 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
NUP98P52948 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.25■■■□□ 2.59
NUP98P52948 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NUP98P52948 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
NUP98P52948 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NUP98P52948 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
NUP98P52948 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.25■■■□□ 2.59
NUP98P52948 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NUP98P52948 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NUP98P52948 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NUP98P52948 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.24■■■□□ 2.59
NUP98P52948 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.24■■■□□ 2.59
NUP98P52948 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.24■■■□□ 2.59
NUP98P52948 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NUP98P52948 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NUP98P52948 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.24■■■□□ 2.59
NUP98P52948 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.24■■■□□ 2.59
NUP98P52948 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.23■■■□□ 2.59
NUP98P52948 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.23■■■□□ 2.59
NUP98P52948 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.22■■■□□ 2.59
NUP98P52948 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.22■■■□□ 2.59
NUP98P52948 MIR6765-201ENST00000614092 87 ntBASIC31.22■■■□□ 2.59
NUP98P52948 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
NUP98P52948 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.22■■■□□ 2.59
NUP98P52948 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NUP98P52948 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NUP98P52948 PVT1_1.1-201ENST00000615125 194 ntBASIC31.21■■■□□ 2.59
NUP98P52948 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NUP98P52948 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.2■■■□□ 2.59
NUP98P52948 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
NUP98P52948 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
NUP98P52948 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
NUP98P52948 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.19■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms