Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.87■■□□□ 1.09
COL8A1P27658 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL8A1P27658 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
COL8A1P27658 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL8A1P27658 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL8A1P27658 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
COL8A1P27658 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
COL8A1P27658 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL8A1P27658 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL8A1P27658 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL8A1P27658 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.86■■□□□ 1.09
COL8A1P27658 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.86■■□□□ 1.09
COL8A1P27658 AC018755.3-202ENST00000596210 929 ntBASIC21.86■■□□□ 1.09
COL8A1P27658 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL8A1P27658 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL8A1P27658 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL8A1P27658 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.85■■□□□ 1.09
COL8A1P27658 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL8A1P27658 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL8A1P27658 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
COL8A1P27658 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.84■■□□□ 1.09
COL8A1P27658 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.84■■□□□ 1.09
COL8A1P27658 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL8A1P27658 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL8A1P27658 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL8A1P27658 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL8A1P27658 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL8A1P27658 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL8A1P27658 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL8A1P27658 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.82■■□□□ 1.08
COL8A1P27658 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL8A1P27658 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.82■■□□□ 1.08
COL8A1P27658 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
COL8A1P27658 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL8A1P27658 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.81■■□□□ 1.08
COL8A1P27658 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL8A1P27658 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.81■■□□□ 1.08
COL8A1P27658 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL8A1P27658 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL8A1P27658 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.8■■□□□ 1.08
COL8A1P27658 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.8■■□□□ 1.08
COL8A1P27658 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.8■■□□□ 1.08
COL8A1P27658 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.8■■□□□ 1.08
COL8A1P27658 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.79■■□□□ 1.08
COL8A1P27658 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL8A1P27658 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.79■■□□□ 1.08
COL8A1P27658 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL8A1P27658 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.78■■□□□ 1.08
COL8A1P27658 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.78■■□□□ 1.08
COL8A1P27658 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.78■■□□□ 1.08
COL8A1P27658 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL8A1P27658 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL8A1P27658 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL8A1P27658 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL8A1P27658 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL8A1P27658 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL8A1P27658 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.76■■□□□ 1.07
COL8A1P27658 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.76■■□□□ 1.07
COL8A1P27658 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.76■■□□□ 1.07
COL8A1P27658 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
COL8A1P27658 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL8A1P27658 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL8A1P27658 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL8A1P27658 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL8A1P27658 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL8A1P27658 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL8A1P27658 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL8A1P27658 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL8A1P27658 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL8A1P27658 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.73■■□□□ 1.07
COL8A1P27658 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL8A1P27658 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.72■■□□□ 1.07
COL8A1P27658 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL8A1P27658 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.72■■□□□ 1.07
COL8A1P27658 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL8A1P27658 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL8A1P27658 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL8A1P27658 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL8A1P27658 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.7■■□□□ 1.06
COL8A1P27658 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.7■■□□□ 1.06
COL8A1P27658 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.7■■□□□ 1.06
COL8A1P27658 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.7■■□□□ 1.06
COL8A1P27658 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
COL8A1P27658 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL8A1P27658 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL8A1P27658 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.69■■□□□ 1.06
COL8A1P27658 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.69■■□□□ 1.06
COL8A1P27658 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.69■■□□□ 1.06
COL8A1P27658 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.69■■□□□ 1.06
COL8A1P27658 MIR3960-201ENST00000583311 91 ntBASIC21.69■■□□□ 1.06
COL8A1P27658 AL139246.5-201ENST00000606645 996 ntBASIC21.69■■□□□ 1.06
COL8A1P27658 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL8A1P27658 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL8A1P27658 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL8A1P27658 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms