Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC41.5■■■■■ 4.23
CHD1O14646 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC41.49■■■■■ 4.23
CHD1O14646 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC41.49■■■■■ 4.23
CHD1O14646 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC41.49■■■■■ 4.23
CHD1O14646 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC41.49■■■■■ 4.23
CHD1O14646 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC41.49■■■■■ 4.23
CHD1O14646 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC41.48■■■■■ 4.23
CHD1O14646 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC41.48■■■■■ 4.23
CHD1O14646 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC41.47■■■■■ 4.23
CHD1O14646 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC41.47■■■■■ 4.23
CHD1O14646 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC41.47■■■■■ 4.23
CHD1O14646 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC41.47■■■■■ 4.23
CHD1O14646 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC41.46■■■■■ 4.23
CHD1O14646 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC41.45■■■■■ 4.23
CHD1O14646 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC41.45■■■■■ 4.23
CHD1O14646 IDNK-203ENST00000405990 629 ntTSL 2 BASIC41.44■■■■■ 4.22
CHD1O14646 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC41.44■■■■■ 4.22
CHD1O14646 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC41.43■■■■■ 4.22
CHD1O14646 Z92544.1-202ENST00000571933 1220 ntBASIC41.43■■■■■ 4.22
CHD1O14646 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC41.43■■■■■ 4.22
CHD1O14646 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC41.42■■■■■ 4.22
CHD1O14646 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC41.42■■■■■ 4.22
CHD1O14646 AC239859.2-201ENST00000444165 318 ntBASIC41.42■■■■■ 4.22
CHD1O14646 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC41.42■■■■■ 4.22
CHD1O14646 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC41.42■■■■■ 4.22
CHD1O14646 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC41.42■■■■■ 4.22
CHD1O14646 PEMT-206ENST00000435340 960 ntTSL 5 BASIC41.41■■■■■ 4.22
CHD1O14646 AL359258.2-201ENST00000564063 1566 ntBASIC41.41■■■■■ 4.22
CHD1O14646 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC41.41■■■■■ 4.22
CHD1O14646 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC41.4■■■■■ 4.22
CHD1O14646 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC41.39■■■■■ 4.22
CHD1O14646 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC41.38■■■■■ 4.22
CHD1O14646 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC41.38■■■■■ 4.22
CHD1O14646 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC41.38■■■■■ 4.21
CHD1O14646 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC41.37■■■■■ 4.21
CHD1O14646 PFN2-211ENST00000489155 636 ntTSL 4 BASIC41.37■■■■■ 4.21
CHD1O14646 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC41.36■■■■■ 4.21
CHD1O14646 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC41.36■■■■■ 4.21
CHD1O14646 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC41.35■■■■■ 4.21
CHD1O14646 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC41.35■■■■■ 4.21
CHD1O14646 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC41.35■■■■■ 4.21
CHD1O14646 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC41.35■■■■■ 4.21
CHD1O14646 TK2-216ENST00000564917 1156 ntTSL 3 BASIC41.34■■■■■ 4.21
CHD1O14646 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
CHD1O14646 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
CHD1O14646 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC41.33■■■■■ 4.21
CHD1O14646 MIR3960-201ENST00000583311 91 ntBASIC41.32■■■■■ 4.21
CHD1O14646 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC41.32■■■■■ 4.21
CHD1O14646 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC41.32■■■■■ 4.2
CHD1O14646 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC41.31■■■■■ 4.2
CHD1O14646 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC41.31■■■■■ 4.2
CHD1O14646 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC41.3■■■■■ 4.2
CHD1O14646 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC41.3■■■■■ 4.2
CHD1O14646 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC41.29■■■■■ 4.2
CHD1O14646 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC41.29■■■■■ 4.2
CHD1O14646 MTX2-204ENST00000443241 799 ntTSL 3 BASIC41.29■■■■■ 4.2
CHD1O14646 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC41.28■■■■■ 4.2
CHD1O14646 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC41.27■■■■■ 4.2
CHD1O14646 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC41.27■■■■■ 4.2
CHD1O14646 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC41.27■■■■■ 4.2
CHD1O14646 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC41.27■■■■■ 4.2
CHD1O14646 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC41.26■■■■■ 4.2
CHD1O14646 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC41.26■■■■■ 4.2
CHD1O14646 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC41.26■■■■■ 4.2
CHD1O14646 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC41.25■■■■■ 4.19
CHD1O14646 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC41.25■■■■■ 4.19
CHD1O14646 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC41.25■■■■■ 4.19
CHD1O14646 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC41.25■■■■■ 4.19
CHD1O14646 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC41.24■■■■■ 4.19
CHD1O14646 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC41.24■■■■■ 4.19
CHD1O14646 UNC93B8-201ENST00000511903 705 ntBASIC41.24■■■■■ 4.19
CHD1O14646 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC41.23■■■■■ 4.19
CHD1O14646 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC41.23■■■■■ 4.19
CHD1O14646 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC41.23■■■■■ 4.19
CHD1O14646 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC41.23■■■■■ 4.19
CHD1O14646 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC41.23■■■■■ 4.19
CHD1O14646 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
CHD1O14646 KRT16P3-201ENST00000439127 1283 ntBASIC41.22■■■■■ 4.19
CHD1O14646 AC131281.2-201ENST00000520478 145 ntBASIC41.22■■■■■ 4.19
CHD1O14646 RALB-208ENST00000631312 311 ntTSL 5 BASIC41.22■■■■■ 4.19
CHD1O14646 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC41.21■■■■■ 4.19
CHD1O14646 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC41.21■■■■■ 4.19
CHD1O14646 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC41.19■■■■■ 4.18
CHD1O14646 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC41.18■■■■■ 4.18
CHD1O14646 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
CHD1O14646 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC41.18■■■■■ 4.18
CHD1O14646 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC41.16■■■■■ 4.18
CHD1O14646 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC41.16■■■■■ 4.18
CHD1O14646 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC41.16■■■■■ 4.18
CHD1O14646 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC41.15■■■■■ 4.18
CHD1O14646 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC41.15■■■■■ 4.18
CHD1O14646 AL135925.1-201ENST00000605920 1701 ntBASIC41.15■■■■■ 4.18
CHD1O14646 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC41.15■■■■■ 4.18
CHD1O14646 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC41.15■■■■■ 4.18
CHD1O14646 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC41.15■■■■■ 4.18
CHD1O14646 AC018755.3-202ENST00000596210 929 ntBASIC41.15■■■■■ 4.18
CHD1O14646 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC41.15■■■■■ 4.18
CHD1O14646 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC41.14■■■■■ 4.18
CHD1O14646 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC41.14■■■■■ 4.18
CHD1O14646 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC41.13■■■■■ 4.18
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms