Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.22■■□□□ 1.47
CACNA1AO00555 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CACNA1AO00555 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CACNA1AO00555 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
CACNA1AO00555 MIR4787-201ENST00000607364 84 ntBASIC24.21■■□□□ 1.47
CACNA1AO00555 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CACNA1AO00555 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CACNA1AO00555 KRT16P3-201ENST00000439127 1283 ntBASIC24.2■■□□□ 1.46
CACNA1AO00555 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CACNA1AO00555 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CACNA1AO00555 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.19■■□□□ 1.46
CACNA1AO00555 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.19■■□□□ 1.46
CACNA1AO00555 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.19■■□□□ 1.46
CACNA1AO00555 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.19■■□□□ 1.46
CACNA1AO00555 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CACNA1AO00555 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.18■■□□□ 1.46
CACNA1AO00555 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.18■■□□□ 1.46
CACNA1AO00555 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.18■■□□□ 1.46
CACNA1AO00555 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CACNA1AO00555 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.18■■□□□ 1.46
CACNA1AO00555 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.17■■□□□ 1.46
CACNA1AO00555 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CACNA1AO00555 AC135279.3-201ENST00000610945 1311 ntBASIC24.16■■□□□ 1.46
CACNA1AO00555 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CACNA1AO00555 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CACNA1AO00555 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CACNA1AO00555 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.16■■□□□ 1.46
CACNA1AO00555 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.16■■□□□ 1.46
CACNA1AO00555 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CACNA1AO00555 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CACNA1AO00555 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CACNA1AO00555 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.15■■□□□ 1.46
CACNA1AO00555 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.15■■□□□ 1.46
CACNA1AO00555 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CACNA1AO00555 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
CACNA1AO00555 AC019171.1-201ENST00000601251 1056 ntBASIC24.14■■□□□ 1.46
CACNA1AO00555 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.46
CACNA1AO00555 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CACNA1AO00555 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CACNA1AO00555 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.14■■□□□ 1.45
CACNA1AO00555 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CACNA1AO00555 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.13■■□□□ 1.45
CACNA1AO00555 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CACNA1AO00555 AC010864.1-201ENST00000609407 1511 ntBASIC24.12■■□□□ 1.45
CACNA1AO00555 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
CACNA1AO00555 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CACNA1AO00555 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CACNA1AO00555 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CACNA1AO00555 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.11■■□□□ 1.45
CACNA1AO00555 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1AO00555 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.1■■□□□ 1.45
CACNA1AO00555 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1AO00555 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1AO00555 AL136116.3-201ENST00000402907 1138 ntBASIC24.09■■□□□ 1.45
CACNA1AO00555 AC096631.2-201ENST00000436136 790 ntBASIC24.09■■□□□ 1.45
CACNA1AO00555 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
CACNA1AO00555 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1AO00555 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1AO00555 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
CACNA1AO00555 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.09■■□□□ 1.45
CACNA1AO00555 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.09■■□□□ 1.45
CACNA1AO00555 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.08■■□□□ 1.45
CACNA1AO00555 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1AO00555 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
CACNA1AO00555 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1AO00555 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1AO00555 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.08■■□□□ 1.44
CACNA1AO00555 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.08■■□□□ 1.44
CACNA1AO00555 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.08■■□□□ 1.44
CACNA1AO00555 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.08■■□□□ 1.44
CACNA1AO00555 AC018755.3-202ENST00000596210 929 ntBASIC24.08■■□□□ 1.44
CACNA1AO00555 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1AO00555 BX664725.1-201ENST00000438252 379 ntBASIC24.07■■□□□ 1.44
CACNA1AO00555 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.07■■□□□ 1.44
CACNA1AO00555 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1AO00555 AC127502.1-201ENST00000399971 1502 ntBASIC24.06■■□□□ 1.44
CACNA1AO00555 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC24.06■■□□□ 1.44
CACNA1AO00555 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.06■■□□□ 1.44
CACNA1AO00555 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1AO00555 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1AO00555 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1AO00555 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.04■■□□□ 1.44
CACNA1AO00555 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
CACNA1AO00555 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CACNA1AO00555 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CACNA1AO00555 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CACNA1AO00555 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
CACNA1AO00555 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CACNA1AO00555 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CACNA1AO00555 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CACNA1AO00555 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CACNA1AO00555 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
CACNA1AO00555 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.01■■□□□ 1.43
CACNA1AO00555 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.01■■□□□ 1.43
CACNA1AO00555 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CACNA1AO00555 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CACNA1AO00555 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24■■□□□ 1.43
CACNA1AO00555 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
CACNA1AO00555 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CACNA1AO00555 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms