Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 KRT89P-201ENST00000620027 1478 ntBASIC18.82■□□□□ 0.6
AP4E1Q9UPM8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AL133373.2-201ENST00000623187 2828 ntBASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 NOC2LP2-201ENST00000407594 1944 ntBASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AC113404.2-201ENST00000507884 177 ntBASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 HYMAI.1-201ENST00000620949 238 ntBASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 LINC00167-201ENST00000530583 1419 ntBASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
AP4E1Q9UPM8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 AC008764.6-201ENST00000595909 2069 ntBASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 LINC00602-201ENST00000629776 2065 ntBASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 LINC01311-201ENST00000565162 1445 ntBASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
AP4E1Q9UPM8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 KRT18P48-201ENST00000434763 852 ntBASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 VENTXP5-201ENST00000523979 775 ntBASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 LINC01238-205ENST00000567549 1107 ntBASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms