Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 MINOS1P3-201ENST00000457048 203 ntBASIC22.72■■□□□ 1.23
CACNA1FO60840 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC22.72■■□□□ 1.23
CACNA1FO60840 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1FO60840 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1FO60840 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
CACNA1FO60840 KRT18P55-202ENST00000578578 1546 ntBASIC22.71■■□□□ 1.23
CACNA1FO60840 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC22.71■■□□□ 1.23
CACNA1FO60840 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC22.71■■□□□ 1.23
CACNA1FO60840 SAPCD2P3-201ENST00000455031 850 ntBASIC22.71■■□□□ 1.23
CACNA1FO60840 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC22.71■■□□□ 1.23
CACNA1FO60840 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC22.71■■□□□ 1.23
CACNA1FO60840 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC22.71■■□□□ 1.23
CACNA1FO60840 IGHV3-41-201ENST00000613121 348 ntBASIC22.71■■□□□ 1.23
CACNA1FO60840 STK4-201ENST00000372801 2038 ntTSL 2 BASIC22.71■■□□□ 1.23
CACNA1FO60840 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.71■■□□□ 1.23
CACNA1FO60840 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC22.71■■□□□ 1.23
CACNA1FO60840 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1FO60840 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 AKR1C7P-201ENST00000305623 895 ntBASIC22.7■■□□□ 1.23
CACNA1FO60840 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC22.7■■□□□ 1.23
CACNA1FO60840 KRT16P4-201ENST00000453883 522 ntBASIC22.7■■□□□ 1.23
CACNA1FO60840 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC22.7■■□□□ 1.23
CACNA1FO60840 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC22.7■■□□□ 1.23
CACNA1FO60840 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC22.7■■□□□ 1.23
CACNA1FO60840 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.23
CACNA1FO60840 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CACNA1FO60840 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC22.7■■□□□ 1.22
CACNA1FO60840 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC22.7■■□□□ 1.22
CACNA1FO60840 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC22.7■■□□□ 1.22
CACNA1FO60840 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1FO60840 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
CACNA1FO60840 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.69■■□□□ 1.22
CACNA1FO60840 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 LSM5-204ENST00000409909 740 ntTSL 2 BASIC22.69■■□□□ 1.22
CACNA1FO60840 AC005104.2-201ENST00000427818 678 ntBASIC22.69■■□□□ 1.22
CACNA1FO60840 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC22.69■■□□□ 1.22
CACNA1FO60840 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.69■■□□□ 1.22
CACNA1FO60840 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.69■■□□□ 1.22
CACNA1FO60840 CCNC-219ENST00000627680 896 ntTSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 LINC00304-203ENST00000565008 1864 ntBASIC22.69■■□□□ 1.22
CACNA1FO60840 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1FO60840 TLE1-202ENST00000376484 666 ntTSL 3 BASIC22.69■■□□□ 1.22
CACNA1FO60840 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.69■■□□□ 1.22
CACNA1FO60840 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.69■■□□□ 1.22
CACNA1FO60840 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms