Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.29■□□□□ 0.36
PROM1O43490 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PROM1O43490 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.29■□□□□ 0.36
PROM1O43490 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.29■□□□□ 0.36
PROM1O43490 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
PROM1O43490 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PROM1O43490 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PROM1O43490 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PROM1O43490 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.28■□□□□ 0.36
PROM1O43490 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.28■□□□□ 0.36
PROM1O43490 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
PROM1O43490 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.28■□□□□ 0.36
PROM1O43490 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.28■□□□□ 0.36
PROM1O43490 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
PROM1O43490 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.28■□□□□ 0.36
PROM1O43490 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.28■□□□□ 0.36
PROM1O43490 PHGDH-209ENST00000641074 1780 ntBASIC17.28■□□□□ 0.36
PROM1O43490 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PROM1O43490 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.27■□□□□ 0.36
PROM1O43490 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PROM1O43490 AP000997.3-201ENST00000623333 2250 ntBASIC17.27■□□□□ 0.36
PROM1O43490 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
PROM1O43490 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PROM1O43490 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PROM1O43490 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.27■□□□□ 0.36
PROM1O43490 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.27■□□□□ 0.36
PROM1O43490 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.27■□□□□ 0.36
PROM1O43490 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PROM1O43490 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PROM1O43490 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PROM1O43490 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PROM1O43490 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PROM1O43490 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PROM1O43490 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PROM1O43490 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.27■□□□□ 0.35
PROM1O43490 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.26■□□□□ 0.35
PROM1O43490 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 HOMER2P1-201ENST00000455653 964 ntBASIC17.26■□□□□ 0.35
PROM1O43490 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.26■□□□□ 0.35
PROM1O43490 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PROM1O43490 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PROM1O43490 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PROM1O43490 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms