Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB3O15347 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
HMGB3O15347 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HMGB3O15347 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB3O15347 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HMGB3O15347 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB3O15347 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB3O15347 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 HACD1-201ENST00000326961 773 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB3O15347 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB3O15347 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC14.66□□□□□ -0.06
HMGB3O15347 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB3O15347 AC006557.6-201ENST00000623071 864 ntBASIC14.66□□□□□ -0.06
HMGB3O15347 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB3O15347 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB3O15347 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
HMGB3O15347 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HMGB3O15347 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB3O15347 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB3O15347 AC108860.2-201ENST00000562760 2183 ntBASIC14.66□□□□□ -0.06
HMGB3O15347 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HMGB3O15347 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 HEIH-201ENST00000623091 1652 ntBASIC14.65□□□□□ -0.06
HMGB3O15347 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HMGB3O15347 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
HMGB3O15347 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HMGB3O15347 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGB3O15347 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HMGB3O15347 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB3O15347 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 AC093677.2-201ENST00000600169 1863 ntBASIC14.65□□□□□ -0.06
HMGB3O15347 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB3O15347 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB3O15347 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
HMGB3O15347 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 NORAD-201ENST00000565493 5339 ntBASIC14.64□□□□□ -0.07
HMGB3O15347 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGB3O15347 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGB3O15347 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
HMGB3O15347 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB3O15347 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB3O15347 APTR-203ENST00000430801 583 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB3O15347 RPS2P52-201ENST00000469610 820 ntBASIC14.64□□□□□ -0.07
HMGB3O15347 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB3O15347 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB3O15347 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB3O15347 OR10C1-204ENST00000622521 1039 ntBASIC14.64□□□□□ -0.07
HMGB3O15347 WWOX-218ENST00000627394 894 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB3O15347 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGB3O15347 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HMGB3O15347 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms