Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
LMX1BO60663 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1BO60663 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1BO60663 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
LMX1BO60663 MYLKP1-201ENST00000509077 1580 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 REXO1L9P-201ENST00000604264 2108 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
LMX1BO60663 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.09■□□□□ 0.17
LMX1BO60663 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
LMX1BO60663 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 AP000692.2-201ENST00000608391 879 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 FAM87A-204ENST00000613235 858 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 AL358472.4-201ENST00000633140 710 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 AC116562.4-202ENST00000641738 218 ntBASIC16.09■□□□□ 0.17
LMX1BO60663 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1BO60663 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1BO60663 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1BO60663 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.08■□□□□ 0.17
LMX1BO60663 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LMX1BO60663 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LMX1BO60663 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.08■□□□□ 0.17
LMX1BO60663 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LMX1BO60663 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LMX1BO60663 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.08■□□□□ 0.16
LMX1BO60663 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1BO60663 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 AC117947.1-201ENST00000427448 529 ntBASIC16.08■□□□□ 0.16
LMX1BO60663 CCR12P-201ENST00000446203 998 ntBASIC16.08■□□□□ 0.16
LMX1BO60663 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1BO60663 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.08■□□□□ 0.16
LMX1BO60663 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1BO60663 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.08■□□□□ 0.16
LMX1BO60663 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
LMX1BO60663 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
LMX1BO60663 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1BO60663 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1BO60663 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1BO60663 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 INGX-201ENST00000359239 846 ntBASIC16.07■□□□□ 0.16
LMX1BO60663 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 RNF152P1-201ENST00000397754 604 ntBASIC16.07■□□□□ 0.16
LMX1BO60663 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1BO60663 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.07■□□□□ 0.16
LMX1BO60663 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1BO60663 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms