Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NDE1Q9NXR1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.75■□□□□ 0.43
NDE1Q9NXR1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NDE1Q9NXR1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 AC008894.3-201ENST00000624324 3103 ntBASIC17.74■□□□□ 0.43
NDE1Q9NXR1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 HLA-A-209ENST00000638375 975 ntBASIC17.74■□□□□ 0.43
NDE1Q9NXR1 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NDE1Q9NXR1 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.74■□□□□ 0.43
NDE1Q9NXR1 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.73■□□□□ 0.43
NDE1Q9NXR1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 AL121832.2-201ENST00000610979 668 ntBASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NDE1Q9NXR1 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NDE1Q9NXR1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms