Protein–RNA interactions for Protein: Q96F44

TRIM11, E3 ubiquitin-protein ligase TRIM11, humanhuman

Predictions only

Length 468 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM11Q96F44 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 AC068880.1-201ENST00000507289 2297 ntBASIC19.38■□□□□ 0.69
TRIM11Q96F44 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM11Q96F44 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM11Q96F44 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 MMP23A-201ENST00000234610 1017 ntBASIC19.37■□□□□ 0.69
TRIM11Q96F44 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM11Q96F44 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM11Q96F44 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.36■□□□□ 0.69
TRIM11Q96F44 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 AC010240.3-201ENST00000607688 395 ntBASIC19.36■□□□□ 0.69
TRIM11Q96F44 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 AC010947.1-201ENST00000623454 693 ntBASIC19.36■□□□□ 0.69
TRIM11Q96F44 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM11Q96F44 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.36■□□□□ 0.69
TRIM11Q96F44 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM11Q96F44 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM11Q96F44 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms