Protein–RNA interactions for Protein: Q8NFR7

CCDC148, Coiled-coil domain-containing protein 148, humanhuman

Predictions only

Length 591 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC148Q8NFR7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 FAM8A6P-201ENST00000407496 1135 ntBASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 PVRIG2P-201ENST00000435460 978 ntBASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC148Q8NFR7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 AL359075.1-203ENST00000462729 1002 ntBASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC148Q8NFR7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC148Q8NFR7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 KRT18P38-201ENST00000449496 1282 ntBASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 AL049597.2-201ENST00000565575 961 ntBASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC148Q8NFR7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CCDC148Q8NFR7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CCDC148Q8NFR7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC148Q8NFR7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC148Q8NFR7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms