Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM1O00151 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.5■□□□□ 0.39
PDLIM1O00151 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM1O00151 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDLIM1O00151 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 AC098590.1-201ENST00000468126 897 ntBASIC17.5■□□□□ 0.39
PDLIM1O00151 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM1O00151 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM1O00151 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM1O00151 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM1O00151 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 AL121829.2-201ENST00000620908 328 ntBASIC17.5■□□□□ 0.39
PDLIM1O00151 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PDLIM1O00151 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM1O00151 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM1O00151 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM1O00151 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM1O00151 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM1O00151 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDLIM1O00151 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM1O00151 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 AL645608.8-201ENST00000606034 2086 ntBASIC17.49■□□□□ 0.39
PDLIM1O00151 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PDLIM1O00151 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM1O00151 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM1O00151 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM1O00151 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 BCL2-203ENST00000589955 5011 ntBASIC17.48■□□□□ 0.39
PDLIM1O00151 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.48■□□□□ 0.39
PDLIM1O00151 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 GCSHP5-201ENST00000443090 522 ntBASIC17.48■□□□□ 0.39
PDLIM1O00151 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PDLIM1O00151 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.48■□□□□ 0.39
PDLIM1O00151 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM1O00151 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM1O00151 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.48■□□□□ 0.39
PDLIM1O00151 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM1O00151 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM1O00151 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM1O00151 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM1O00151 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM1O00151 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms