Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
LIM2P55344 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIM2P55344 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.46■□□□□ 0.38
LIM2P55344 NOC2LP1-202ENST00000452600 2235 ntBASIC17.45■□□□□ 0.38
LIM2P55344 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.45■□□□□ 0.38
LIM2P55344 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 AC020763.4-201ENST00000623414 4170 ntBASIC17.45■□□□□ 0.38
LIM2P55344 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIM2P55344 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
LIM2P55344 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 AC104076.2-201ENST00000448912 469 ntBASIC17.45■□□□□ 0.38
LIM2P55344 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.45■□□□□ 0.38
LIM2P55344 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.45■□□□□ 0.38
LIM2P55344 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 MIR3180-4-201ENST00000582223 153 ntBASIC17.45■□□□□ 0.38
LIM2P55344 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LIM2P55344 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.45■□□□□ 0.38
LIM2P55344 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.45■□□□□ 0.38
LIM2P55344 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIM2P55344 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.45■□□□□ 0.38
LIM2P55344 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LIM2P55344 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.44■□□□□ 0.38
LIM2P55344 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.44■□□□□ 0.38
LIM2P55344 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 AK4P3-201ENST00000418260 669 ntBASIC17.44■□□□□ 0.38
LIM2P55344 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.44■□□□□ 0.38
LIM2P55344 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.44■□□□□ 0.38
LIM2P55344 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIM2P55344 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIM2P55344 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.44■□□□□ 0.38
LIM2P55344 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.43■□□□□ 0.38
LIM2P55344 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.43■□□□□ 0.38
LIM2P55344 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.43■□□□□ 0.38
LIM2P55344 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 AC099343.3-201ENST00000605834 2503 ntBASIC17.43■□□□□ 0.38
LIM2P55344 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LIM2P55344 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LIM2P55344 RNF152P1-201ENST00000397754 604 ntBASIC17.43■□□□□ 0.38
LIM2P55344 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.43■□□□□ 0.38
LIM2P55344 FAM210CP-201ENST00000445714 574 ntBASIC17.43■□□□□ 0.38
LIM2P55344 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms