Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MIR3648-2-201ENST00000581792 180 ntBASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MIR3648-1-201ENST00000615959 180 ntBASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 GOLGA2P11-201ENST00000562660 1621 ntBASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CSPG4P11-201ENST00000560634 4910 ntBASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
CHKB-CPT1BH3BT56 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 PCDHB17P-201ENST00000539533 2393 ntBASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CHKB-CPT1BH3BT56 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CHKB-CPT1BH3BT56 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms